Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq35 95.1 1e-14
seq1042 93.3 4e-14
>seq35
Length=1961283
Score = 95.1 bits (104), Expect = 1e-14
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531
||||| || ||||| | ||| || ||||||||||| ||||| || || || ||| ||
Sbjct 1196825 ATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGG 1196766
Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591
|| ||||| || |||| |||||| | || ||| ||||| | |||| ||| | ||
Sbjct 1196765 AACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGA 1196706
Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638
|| ||||| || || || || ||||||||||| || |||| |||
Sbjct 1196705 TTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659
>seq1042
Length=111944
Score = 93.3 bits (102), Expect = 4e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531
||||| ||||| || | ||| || ||||||||||| ||||| |||||||| ||| ||
Sbjct 80533 ATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATTATTTGG 80592
Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591
|| ||||| || |||| |||||| | || ||| ||||| ||||||||| | ||
Sbjct 80593 AACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTAACAAGA 80652
Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGT 16637
|| ||| | || || || | ||||| ||||| || | |||||
Sbjct 80653 TTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGT 80698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511261455131000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |