Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq35 95.1 1e-14 seq1042 93.3 4e-14 >seq35 Length=1961283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || ||||| | ||| || ||||||||||| ||||| || || || ||| || Sbjct 1196825 ATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGG 1196766 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || ||||| || |||| |||||| | || ||| ||||| | |||| ||| | || Sbjct 1196765 AACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGA 1196706 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638 || ||||| || || || || ||||||||||| || |||| ||| Sbjct 1196705 TTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659 >seq1042 Length=111944 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| ||||| || | ||| || ||||||||||| ||||| |||||||| ||| || Sbjct 80533 ATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATTATTTGG 80592 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || ||||| || |||| |||||| | || ||| ||||| ||||||||| | || Sbjct 80593 AACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTAACAAGA 80652 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGT 16637 || ||| | || || || | ||||| ||||| || | ||||| Sbjct 80653 TTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGT 80698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511261455131000