Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq35 116 4e-21 seq1042 100 3e-16 seq1089 98.7 1e-15 seq474 98.7 1e-15 seq757 96.9 4e-15 seq7356 87.8 2e-12 seq989 84.2 3e-11 >seq35 Length=1961283 Score = 116 bits (128), Expect = 4e-21 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||| | || ||| ||| || | || ||||||| || | || | Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||||||| | ||||| |||||| || || || ||||| ||||| ||||| | Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013 Query 24277 CAATAAGTCTTTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 ||| | ||||| ||| || || || ||| ||||| || |||||||||| | Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381 |||||||||||||||| ||||| || || ||||||||||| | | ||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 |||| || |||||| ||||| || | ||||||||||| ||||| || ||||| || Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 ||||| || || || |||||||||||||| || | || |||||| | | |||| ||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 | | ||||||||| || || || || || |||||||| || ||||| || |||| Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652 Query 24576 AA 24577 || Sbjct 1196651 AA 1196650 >seq1042 Length=111944 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||||| ||||||||| || || | ||||||||||| ||||| || || || || Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 ||||| || || || |||||||||||||| || | || |||||| | ||||||||| Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 24516 GCTAAATTTTCATTCACTATTCC 24538 | | ||||||| | ||||| || Sbjct 80647 ACAAGATTTTCACTAACTATGCC 80669 >seq1089 Length=106908 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 ||||| || || ||||| ||||||||||||||||| || || || | ||||| ||||||| Sbjct 31595 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 31654 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 || || || || ||||| ||||| || | ||||| ||||||||||||| || || Sbjct 31655 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 31713 >seq474 Length=173882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 ||||| || || ||||| ||||||||||||||||| || || || | ||||| ||||||| Sbjct 164767 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 164708 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 || || || || ||||| ||||| || | ||||| ||||||||||||| || || Sbjct 164707 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 164649 >seq757 Length=226151 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254 ||||| ||||| | ||| |||||||| || | ||||||||| ||||| ||||| ||||| Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815 Query 53255 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 53314 ||||| | || || |||||||| ||||| | | ||||| ||||||| |||| Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 204755 Query 53315 CAATTCCA 53322 |||||||| Sbjct 204754 CAATTCCA 204747 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/172 (71%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 |||||| | ||| ||||| | || ||||||||||||||| || ||||| ||||| || Sbjct 190799 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 190858 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 |||||| |||||| || | | || |||| ||||| ||||||| ||||| Sbjct 190859 ATAAATAGTTTCGTGAATTTGTATGTTAAGATACCTAGCTTCTTTATTATCAAAAGGATA 190918 Query 53509 ----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 53556 |||| | |||||| |||||||||||||| | |||||| || || Sbjct 190919 TCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 190966 >seq7356 Length=7625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/172 (72%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 |||||| | ||| ||||| | || ||||||||||||||| || ||||| ||||| || Sbjct 4489 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 4430 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 |||||| |||||| || | | || |||| | ||||| ||||||| ||||| Sbjct 4429 ATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGATA 4370 Query 53509 ----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 53556 |||| | |||||| |||||||||||||| | |||||| || || Sbjct 4369 TCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 4322 >seq989 Length=145162 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 ||||||||||||||| || ||||| ||||| |||||||| | |||| || | | || Sbjct 126942 AGCTAGTTCACAACTTGCTTCTAAAGCACCATAATAAATAGATTCGTGAATTTGTGTGTT 126883 Query 53476 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 53535 ||| || ||||| ||||||| ||||| || | |||||| |||||||| Sbjct 126882 AAGAACTCTAGCTTCTTTATTATCAAAAGGATATTTCATTTTAATAAATAAATCTGCTAA 126823 Query 53536 TCCTTGAACACCAATACCGAT 53556 |||||| |||||||| || || Sbjct 126822 TCCTTGGACACCAATTCCAAT 126802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593544040134000