Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2302 86.0 6e-12 >seq2302 Length=121279 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| || | || || ||| | | Sbjct 53190 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53131 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| || || | ||||| || || ||||| | |||||| Sbjct 53130 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53071 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || || || || || |||| || ||||| |||||||||| Sbjct 53070 CAACGTTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53011 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || | || || || | |||||||| Sbjct 53010 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 52976 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| || | || || ||| | | Sbjct 53418 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53359 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| || || | ||||| || || ||||| | |||||| Sbjct 53358 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53299 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || || || || || |||| || ||||| |||||||||| Sbjct 53298 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53239 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || | || || || | |||||||| Sbjct 53238 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 53204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || ||||| || || ||||| || | || || ||| | | Sbjct 52734 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATTACATTGGAAGTAGAATCTTCT 52675 Query 40750 GA--CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || || || ||| | | |||| || || | ||||| || || ||||| | |||| Sbjct 52674 GATTCAAT-TGAAAATG-TGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACC 52617 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || |||| || || || || || || || | || ||||| |||||| | Sbjct 52616 AGCAACGTCTGATCTTTGCCGGAAAGCAACTTGAAGATGGACGTACCCTTTCCGACTATA 52557 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || || || | || || || | |||||||| Sbjct 52556 ACATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCG 52520 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| || | || || ||| | | Sbjct 53874 ATGCAAATCTTCGTTAAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCT 53815 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | ||| | |||| || || | ||||| || || ||||| | |||||| Sbjct 53814 GATTCTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53755 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || || || || || |||| || ||||| |||||||||| Sbjct 53754 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53695 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || | || || || | |||||||| Sbjct 53694 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 53660 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| || ||||| || || ||||| || | || || ||| | | Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | || | || || | |||||||| || ||||| | ||||| Sbjct 54270 GATTCCATTGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 54211 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || || || || || |||| || ||||| |||||||||| Sbjct 54210 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 54151 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || | || || || | |||||||| Sbjct 54150 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 54116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515065117258000