Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 86.0 6e-12
>seq2302
Length=121279
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || ||||| || | || || ||| | |
Sbjct 53190 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53131
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | |||| || || | ||||| || || ||||| | ||||||
Sbjct 53130 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53071
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| || || || || || || |||| || ||||| ||||||||||
Sbjct 53070 CAACGTTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53011
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| || || || | || || || | ||||||||
Sbjct 53010 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 52976
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || ||||| || | || || ||| | |
Sbjct 53418 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53359
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | |||| || || | ||||| || || ||||| | ||||||
Sbjct 53358 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53299
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| || || || || || || |||| || ||||| ||||||||||
Sbjct 53298 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53239
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| || || || | || || || | ||||||||
Sbjct 53238 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 53204
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| |||||||| || ||||| || || ||||| || | || || ||| | |
Sbjct 52734 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATTACATTGGAAGTAGAATCTTCT 52675
Query 40750 GA--CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|| || || ||| | | |||| || || | ||||| || || ||||| | ||||
Sbjct 52674 GATTCAAT-TGAAAATG-TGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACC 52617
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
||||||| || |||| || || || || || || || | || ||||| |||||| |
Sbjct 52616 AGCAACGTCTGATCTTTGCCGGAAAGCAACTTGAAGATGGACGTACCCTTTCCGACTATA 52557
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||| || || || | || || || | ||||||||
Sbjct 52556 ACATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCG 52520
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || ||||| || | || || ||| | |
Sbjct 53874 ATGCAAATCTTCGTTAAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCT 53815
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | ||| | |||| || || | ||||| || || ||||| | ||||||
Sbjct 53814 GATTCTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53755
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| || || || || || || |||| || ||||| ||||||||||
Sbjct 53754 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53695
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| || || || | || || || | ||||||||
Sbjct 53694 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 53660
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || ||||| || ||||| || || ||||| || | || || ||| | |
Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | || | || || | |||||||| || ||||| | |||||
Sbjct 54270 GATTCCATTGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 54211
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| || || || || || || |||| || ||||| ||||||||||
Sbjct 54210 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 54151
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| || || || | || || || | ||||||||
Sbjct 54150 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 54116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515065117258000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |