Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq3495 504 2e-138 seq2959 298 1e-76 >seq3495 Length=4271 Score = 504 bits (558), Expect = 2e-138 Identities = 465/585 (79%), Gaps = 4/585 (1%) Strand=Plus/Minus Query 17106 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 17165 || || || || ||||||| || || || |||||||||| ||||||||| || || Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967 Query 17166 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 17223 | ||| || ||||| || | || ||| || | || ||||||||||| |||||| | | Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908 Query 17224 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 17283 || | || || || ||||||||| ||||| | || | || ||| || |||| Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848 Query 17284 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTTATCGCCTCTGAAAACGTGGTGTTCG 17343 ||||||| || |||||||| || |||||||| |||| || ||||||||||| ||||| | Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788 Query 17344 GTATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 17403 ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728 Query 17404 AGTACAGCCTGACCGGTACTGAAGACGATGCCATGCTGCTGGCCGATGTGCCTTACCCGC 17463 ||||||||||||||||||| || ||||||||||| |||||| | ||||| |||||||||| Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668 Query 17464 AGCGCAAATATCAGCAGATGGGCCTTAAGGCTGGGCAGATTTTCTGGTACCGCGCGCAGC 17523 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608 Query 17524 TGGTTGACCGCAGCGGTAACGAGTCAGGTTATACCGGCTGGGTTCGTGGGCAGGCCAGTA 17583 |||| ||||| | ||| || || || || || |||| | || ||||| |||||||| Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548 Query 17584 TCGATGTTTCTGACATCACAGATGTGATCCTTGAAGACATCAAAGGGTCTGAGACGTTCA 17643 | ||||| || || |||||||||| || || || ||||| ||| || || |||| Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488 Query 17644 AAGACCTGATCGAGAACGCTGTGGACAGCAATGAAAAAATTGCTG 17688 | |||||||||||| | || |||| ||||| ||| ||| | |||| Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTG 443 >seq2959 Length=4395 Score = 298 bits (330), Expect = 1e-76 Identities = 462/647 (71%), Gaps = 16/647 (2%) Strand=Plus/Minus Query 31354 GCGCGGAGTGTTGATTTTCTCAATGGAAATGAGCGCATTGCAGATTGCAGAGCGA-AGCA 31412 |||||| ||| |||||||| ||||||||| ||| ||||||| ||||| ||| Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGC- 1052 Query 31413 TTGCCAACGCCGGGAGGATGTCAGTTAGCGTGCTGCGAAATCCTGCATCGATGGATGACG 31472 |||| || || | ||||||| | ||||||||||| ||| ||||| |||| Sbjct 1051 TTGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACG 992 Query 31473 AAGGCTGGGCGCGTGTTGCTAACGGCATGAGTCAGCTTGCA-GATTTGGATGTATGGGTA 31531 |||||||||| || | || ||| | || |||| ||| | || |||||| | Sbjct 991 AAGGCTGGGCAAAAGTCACCGCTGGAATGGGA-AGATTGCTTGATCTCGACGTATGGATT 933 Query 31532 GTCGATGCCT-CGCGGTTATCGGTCGAAGAAATTCGCTCAATCGCAGAACGGCACAAACA 31590 || || ||| | | | | || | || | || ||| | ||||| ||||| ||||| | Sbjct 932 GTGGACGCCAGCAAGATGAACG-TGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGCG 874 Query 31591 GGAAAATCCAAACCTGTCACTCATCATGGCGGATTATCTTGGCCTGATTGAGAAGCCGAA 31650 | || || || || |||||| | | || || || ||||||||||| ||||| || Sbjct 873 CAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAAA 814 Query 31651 AGCAGATCGCAACGACCTCGCAATTGCTCACATCTCAGGAAGCCTGAAGGCGATGGCGAA 31710 ||||| ||||||||||| || || || |||||||| || ||||||||| ||||| || Sbjct 813 GGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAAGCGCATGGCAAA 754 Query 31711 AGACCTGAAAACGCCTGTTATCTCCCTGAGTCAGCTTTCACGCGATGTTGAGAAGCGACC 31770 ||| || |||||||||||||| || || |||||||| || ||||||||||| ||||| || Sbjct 753 AGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGCCC 694 Query 31771 AA----ACA--AACGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAGGA 31824 | ||| || ||||| ||||| ||| |||| || || ||||||||||| ||||| Sbjct 693 GAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAGGA 634 Query 31825 CGCAGACTCAATCATCATGCTCTATAGGGAAGCGGTATATGACG-AGAA-CAGTAGCGCC 31882 ||| ||| |||||||||||||| | ||||| || ||||||| |||| | | || Sbjct 633 CGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA--GCT 576 Query 31883 GCGCCATTTGCTGAAATCATTGTGACAAAAAACCGTTTTGGCTCGCTTGGTACGGTTTAC 31942 ||| || || |||||||| || || |||||||| || || ||| || || || ||| Sbjct 575 GCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCTAC 516 Query 31943 CAGCGGTTCTGTAACGGACACTTTGTTGCATGTGACCAGGATGAAGC 31989 ||| ||| |||||| || ||| || |||||||| ||||| Sbjct 515 CAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126984712199900