Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_002167.1
Length=39732
Score E
Sequences producing significant alignments: (Bits) Value
seq3495 504 2e-138
seq2959 298 1e-76
>seq3495
Length=4271
Score = 504 bits (558), Expect = 2e-138
Identities = 465/585 (79%), Gaps = 4/585 (1%)
Strand=Plus/Minus
Query 17106 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 17165
|| || || || ||||||| || || || |||||||||| ||||||||| || ||
Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967
Query 17166 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 17223
| ||| || ||||| || | || ||| || | || ||||||||||| |||||| | |
Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908
Query 17224 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 17283
|| | || || || ||||||||| ||||| | || | || ||| || ||||
Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848
Query 17284 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTTATCGCCTCTGAAAACGTGGTGTTCG 17343
||||||| || |||||||| || |||||||| |||| || ||||||||||| ||||| |
Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788
Query 17344 GTATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 17403
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728
Query 17404 AGTACAGCCTGACCGGTACTGAAGACGATGCCATGCTGCTGGCCGATGTGCCTTACCCGC 17463
||||||||||||||||||| || ||||||||||| |||||| | ||||| ||||||||||
Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668
Query 17464 AGCGCAAATATCAGCAGATGGGCCTTAAGGCTGGGCAGATTTTCTGGTACCGCGCGCAGC 17523
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608
Query 17524 TGGTTGACCGCAGCGGTAACGAGTCAGGTTATACCGGCTGGGTTCGTGGGCAGGCCAGTA 17583
|||| ||||| | ||| || || || || || |||| | || ||||| ||||||||
Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548
Query 17584 TCGATGTTTCTGACATCACAGATGTGATCCTTGAAGACATCAAAGGGTCTGAGACGTTCA 17643
| ||||| || || |||||||||| || || || ||||| ||| || || ||||
Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488
Query 17644 AAGACCTGATCGAGAACGCTGTGGACAGCAATGAAAAAATTGCTG 17688
| |||||||||||| | || |||| ||||| ||| ||| | ||||
Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTG 443
>seq2959
Length=4395
Score = 298 bits (330), Expect = 1e-76
Identities = 462/647 (71%), Gaps = 16/647 (2%)
Strand=Plus/Minus
Query 31354 GCGCGGAGTGTTGATTTTCTCAATGGAAATGAGCGCATTGCAGATTGCAGAGCGA-AGCA 31412
|||||| ||| |||||||| ||||||||| ||| ||||||| ||||| |||
Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGC- 1052
Query 31413 TTGCCAACGCCGGGAGGATGTCAGTTAGCGTGCTGCGAAATCCTGCATCGATGGATGACG 31472
|||| || || | ||||||| | ||||||||||| ||| ||||| ||||
Sbjct 1051 TTGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACG 992
Query 31473 AAGGCTGGGCGCGTGTTGCTAACGGCATGAGTCAGCTTGCA-GATTTGGATGTATGGGTA 31531
|||||||||| || | || ||| | || |||| ||| | || |||||| |
Sbjct 991 AAGGCTGGGCAAAAGTCACCGCTGGAATGGGA-AGATTGCTTGATCTCGACGTATGGATT 933
Query 31532 GTCGATGCCT-CGCGGTTATCGGTCGAAGAAATTCGCTCAATCGCAGAACGGCACAAACA 31590
|| || ||| | | | | || | || | || ||| | ||||| ||||| ||||| |
Sbjct 932 GTGGACGCCAGCAAGATGAACG-TGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGCG 874
Query 31591 GGAAAATCCAAACCTGTCACTCATCATGGCGGATTATCTTGGCCTGATTGAGAAGCCGAA 31650
| || || || || |||||| | | || || || ||||||||||| ||||| ||
Sbjct 873 CAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAAA 814
Query 31651 AGCAGATCGCAACGACCTCGCAATTGCTCACATCTCAGGAAGCCTGAAGGCGATGGCGAA 31710
||||| ||||||||||| || || || |||||||| || ||||||||| ||||| ||
Sbjct 813 GGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAAGCGCATGGCAAA 754
Query 31711 AGACCTGAAAACGCCTGTTATCTCCCTGAGTCAGCTTTCACGCGATGTTGAGAAGCGACC 31770
||| || |||||||||||||| || || |||||||| || ||||||||||| ||||| ||
Sbjct 753 AGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGCCC 694
Query 31771 AA----ACA--AACGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAGGA 31824
| ||| || ||||| ||||| ||| |||| || || ||||||||||| |||||
Sbjct 693 GAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAGGA 634
Query 31825 CGCAGACTCAATCATCATGCTCTATAGGGAAGCGGTATATGACG-AGAA-CAGTAGCGCC 31882
||| ||| |||||||||||||| | ||||| || ||||||| |||| | | ||
Sbjct 633 CGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA--GCT 576
Query 31883 GCGCCATTTGCTGAAATCATTGTGACAAAAAACCGTTTTGGCTCGCTTGGTACGGTTTAC 31942
||| || || |||||||| || || |||||||| || || ||| || || || |||
Sbjct 575 GCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCTAC 516
Query 31943 CAGCGGTTCTGTAACGGACACTTTGTTGCATGTGACCAGGATGAAGC 31989
||| ||| |||||| || ||| || |||||||| |||||
Sbjct 515 CAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 126984712199900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |