Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 96.9 3e-15
>seq2302
Length=121279
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || |||||||||||| | |||||| ||||||||||||||||| |||
Sbjct 52962 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53021
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| || || || || || || |||||||| |||| | ||| ||||| || || |
Sbjct 53022 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTG 53081
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688
| || || ||||||||| || || ||||| | ||| | || || | || | ||
Sbjct 53082 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGAT-TCC 53140
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| | || | || || || || || || || || || || |||||
Sbjct 53141 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53190
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || |||||||||||| | |||||| ||||||||||||||||| |||
Sbjct 53874 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53933
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| || || || || || || |||||||| |||| | ||| || ||||| || |
Sbjct 53934 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTG 53993
Query 118630 GTATGCCCTCCTTGTCT 118646
| || || |||||||||
Sbjct 53994 GGATACCTTCCTTGTCT 54010
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || |||||||||||| | |||||| ||||||||||||||||| |||
Sbjct 53190 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53249
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| || || || || || || ||||| || |||| | ||| ||||| || || |
Sbjct 53250 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTG 53309
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688
| || || ||||||||| || || ||||| | ||| | || || | || | ||
Sbjct 53310 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGAT-TCC 53368
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| | || | || || || || || || || || || || |||||
Sbjct 53369 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || |||||||||||| | |||||| ||||||||||||||||| |||
Sbjct 54102 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 54161
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| || || || || || || ||||| || |||| | ||| || || || || |
Sbjct 54162 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTG 54221
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688
| || || || |||||| || || ||| || | ||| | || || | || | ||
Sbjct 54222 GGATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGAT-TCC 54280
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| | || | || || || || || || |||||||| || |||||
Sbjct 54281 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330
Score = 89.7 bits (98), Expect = 4e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || |||||||||||| | |||||| ||||||||||||||||| |||
Sbjct 53646 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53705
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| || || || || || || ||||| || |||| | ||| ||||| || || |
Sbjct 53706 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTG 53765
Query 118630 GTATGCCCTCCTTGTCT 118646
| || || |||||||||
Sbjct 53766 GGATACCTTCCTTGTCT 53782
Score = 86.0 bits (94), Expect = 5e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || |||||||||||| | |||||| ||||||||||||||||| |||
Sbjct 53418 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53477
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| || || || || || || ||||| || |||| | ||| || || || || |
Sbjct 53478 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTG 53537
Query 118630 GTATGCCCTCCTTGTCT 118646
| || || |||||||||
Sbjct 53538 GGATACCTTCCTTGTCT 53554
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|||||||||||| | ||||| |||||||||||||| || ||| | || || |||
Sbjct 52522 CAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATC 52581
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || || ||||| || |||| ||||| ||||| || || || || || ||||||||
Sbjct 52582 TTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTC 52641
Query 118646 T 118646
|
Sbjct 52642 T 52642
Score = 82.4 bits (90), Expect = 7e-11
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | || |||||||||||| | ||||| |||||||||||||| || | |
Sbjct 52734 TACCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGT--C 52791
Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627
| |||| |||| || || || || ||||| || |||| | ||| || || || ||
Sbjct 52792 AGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGG 52851
Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCT 118686
|| || || ||||||||| || || ||||| | ||| | || || | || | |
Sbjct 52852 TGGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGAT-T 52910
Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| ||||| | || | || || || || || || || || || || |||||
Sbjct 52911 CCACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 52962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433703901156100
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