Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2302 96.9 3e-15 >seq2302 Length=121279 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || |||||||||||| | |||||| ||||||||||||||||| ||| Sbjct 52962 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53021 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || || |||||||| |||| | ||| ||||| || || | Sbjct 53022 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTG 53081 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||||||| || || ||||| | ||| | || || | || | || Sbjct 53082 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGAT-TCC 53140 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | || || || || || || || || || || ||||| Sbjct 53141 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53190 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || |||||||||||| | |||||| ||||||||||||||||| ||| Sbjct 53874 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53933 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || || |||||||| |||| | ||| || ||||| || | Sbjct 53934 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTG 53993 Query 118630 GTATGCCCTCCTTGTCT 118646 | || || ||||||||| Sbjct 53994 GGATACCTTCCTTGTCT 54010 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || |||||||||||| | |||||| ||||||||||||||||| ||| Sbjct 53190 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53249 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || || ||||| || |||| | ||| ||||| || || | Sbjct 53250 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTG 53309 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||||||| || || ||||| | ||| | || || | || | || Sbjct 53310 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGAT-TCC 53368 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | || || || || || || || || || || ||||| Sbjct 53369 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || |||||||||||| | |||||| ||||||||||||||||| ||| Sbjct 54102 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 54161 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || || ||||| || |||| | ||| || || || || | Sbjct 54162 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTG 54221 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| || || ||| || | ||| | || || | || | || Sbjct 54222 GGATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGAT-TCC 54280 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | || || || || || || |||||||| || ||||| Sbjct 54281 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || |||||||||||| | |||||| ||||||||||||||||| ||| Sbjct 53646 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53705 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || || ||||| || |||| | ||| ||||| || || | Sbjct 53706 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTG 53765 Query 118630 GTATGCCCTCCTTGTCT 118646 | || || ||||||||| Sbjct 53766 GGATACCTTCCTTGTCT 53782 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || |||||||||||| | |||||| ||||||||||||||||| ||| Sbjct 53418 TACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 53477 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || || ||||| || |||| | ||| || || || || | Sbjct 53478 AAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTG 53537 Query 118630 GTATGCCCTCCTTGTCT 118646 | || || ||||||||| Sbjct 53538 GGATACCTTCCTTGTCT 53554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | ||||| |||||||||||||| || ||| | || || ||| Sbjct 52522 CAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATC 52581 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || ||||| || |||| ||||| ||||| || || || || || |||||||| Sbjct 52582 TTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTC 52641 Query 118646 T 118646 | Sbjct 52642 T 52642 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || |||||||||||| | ||||| |||||||||||||| || | | Sbjct 52734 TACCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGT--C 52791 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | |||| |||| || || || || ||||| || |||| | ||| || || || || Sbjct 52792 AGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGG 52851 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCT 118686 || || || ||||||||| || || ||||| | ||| | || || | || | | Sbjct 52852 TGGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGAT-T 52910 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| | || | || || || || || || || || || || ||||| Sbjct 52911 CCACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 52962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433703901156100