Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_002321.1
Length=41401
Score E
Sequences producing significant alignments: (Bits) Value
seq3883 196 1e-45
>seq3883
Length=4185
Score = 196 bits (216), Expect = 1e-45
Identities = 404/594 (68%), Gaps = 19/594 (3%)
Strand=Plus/Plus
Query 6221 ACCGAAGACGAAAATATTATACTCTTGTTTCGCTTGCATTCAAGAATCTAAAGAATCCGA 6280
||| || || ||| ||||| ||||| || || || ||||| |||||||| || ||
Sbjct 136 ACCCAAAACTAAAGAGTTATATAGTTGTTATGCATGTATCCAAGATTCTAAAGAGTCTGA 195
Query 6281 CACTCAAACGAATCTCAATACAGGTAGCAAATTCATTAAAACTATTATTATCAGAGATAC 6340
|| ||||| | | | ||||||||||| || || || |||||| ||||||| ||||| |
Sbjct 196 TACGCAAACAAGTATTAATACAGGTAGTAAGTTTATAAAAACTTTTATTATAAGAGACCC 255
Query 6341 ACGAGGTGATTATAAACCAACAAATAAGCATTACGTCTTGCATGAAGGGCAAAGATTTAA 6400
|||||||||||||||| | ||||||||||| || |||| ||||| | | | |
Sbjct 256 TAGAGGTGATTATAAACCTAGTAATAAGCATTATGTTATGCACGAAGGTATTCGCTATGA 315
Query 6401 CATCAAATATGTAAAGCCAGATTATCAAGATAAATCTTATTTGCGTATCTATGGCGAGGT 6460
| || ||| | ||||||||||||| || ||||| | || || ||||||| |||||
Sbjct 316 TGTGAAGTATTTTAAGCCAGATTATCGTGACAAATCATTCTTACGAGTCTATGGTGAGGT 375
Query 6461 GGTCATTTAATGGGGGCAAGAATTGAAAGTAATAACATCGAACAAGGTTTGAAAAATGCA 6520
| | || || |||| || | |||||||| |||| || ||| || || ||||| |
Sbjct 376 GTTAATATAGTGGGTGCTAAAATTGAAAAAAATACAATAGAATCTGGATT-AAAAAGAGA 434
Query 6521 GTTTTAAAAATGAATT--TAAATAG--TAATGTAATTGTCAAAGCTGGGGCTATGTCATT 6576
||| | || || | || | ||| | || | | || || ||| || ||
Sbjct 435 GTT---ACTATCTTTTCCGAGATTGCAGAATAAAGTTTTAAGAGAAGGTGCTTCTTCTTT 491
Query 6577 AGTCCCGCTTTTA---AAAGTAATACACCT---TTTGCGAATACTAAAAAGCATGCTCGC 6630
| |||| | ||| ||| ||||||||| || || | ||| |||||
Sbjct 492 AATCCCATTATTAGTTAAA--AATACACCTAAAAGTGAGAGAAGCAAA---CATGCAAAA 546
Query 6631 GATCACATAGCTGTTTCTAATGTGAAAACAGACAGACACACAAGTGAGAAAATCGTTACA 6690
|| || | || |||||||||| ||||| || ||| | | ||| ||| || |||
Sbjct 547 GACCATGTTGCAATTTCTAATGTCAAAACTGATAGAGATTCTTATGAAAAATATGTAACA 606
Query 6691 ATTGGTTACGCTAAAGGCGTCTCACATCGTATTCATGCAACAGAATTTGGAACAATGTAC 6750
| ||||| | ||||| ||| | ||||||| | ||||||||||| |||||
Sbjct 607 GTAGGTTATGAAAAAGGATATAGTCATAGAATTCATGTCATTGAATTTGGAACCATGTAT 666
Query 6751 CAAAAACCACAATTGTTTATAACAAAAACAGAAAAGCAAGGGAAAAACAAAGTT 6804
|||||||||||||||||| | || |||| ||||| || | | ||||| ||||
Sbjct 667 CAAAAACCACAATTGTTTGTCACTAAAAGTGAAAAAGAACGTAGAAACATAGTT 720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132323994828550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |