Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_002321.1 Length=41401 Score E Sequences producing significant alignments: (Bits) Value seq3883 196 1e-45 >seq3883 Length=4185 Score = 196 bits (216), Expect = 1e-45 Identities = 404/594 (68%), Gaps = 19/594 (3%) Strand=Plus/Plus Query 6221 ACCGAAGACGAAAATATTATACTCTTGTTTCGCTTGCATTCAAGAATCTAAAGAATCCGA 6280 ||| || || ||| ||||| ||||| || || || ||||| |||||||| || || Sbjct 136 ACCCAAAACTAAAGAGTTATATAGTTGTTATGCATGTATCCAAGATTCTAAAGAGTCTGA 195 Query 6281 CACTCAAACGAATCTCAATACAGGTAGCAAATTCATTAAAACTATTATTATCAGAGATAC 6340 || ||||| | | | ||||||||||| || || || |||||| ||||||| ||||| | Sbjct 196 TACGCAAACAAGTATTAATACAGGTAGTAAGTTTATAAAAACTTTTATTATAAGAGACCC 255 Query 6341 ACGAGGTGATTATAAACCAACAAATAAGCATTACGTCTTGCATGAAGGGCAAAGATTTAA 6400 |||||||||||||||| | ||||||||||| || |||| ||||| | | | | Sbjct 256 TAGAGGTGATTATAAACCTAGTAATAAGCATTATGTTATGCACGAAGGTATTCGCTATGA 315 Query 6401 CATCAAATATGTAAAGCCAGATTATCAAGATAAATCTTATTTGCGTATCTATGGCGAGGT 6460 | || ||| | ||||||||||||| || ||||| | || || ||||||| ||||| Sbjct 316 TGTGAAGTATTTTAAGCCAGATTATCGTGACAAATCATTCTTACGAGTCTATGGTGAGGT 375 Query 6461 GGTCATTTAATGGGGGCAAGAATTGAAAGTAATAACATCGAACAAGGTTTGAAAAATGCA 6520 | | || || |||| || | |||||||| |||| || ||| || || ||||| | Sbjct 376 GTTAATATAGTGGGTGCTAAAATTGAAAAAAATACAATAGAATCTGGATT-AAAAAGAGA 434 Query 6521 GTTTTAAAAATGAATT--TAAATAG--TAATGTAATTGTCAAAGCTGGGGCTATGTCATT 6576 ||| | || || | || | ||| | || | | || || ||| || || Sbjct 435 GTT---ACTATCTTTTCCGAGATTGCAGAATAAAGTTTTAAGAGAAGGTGCTTCTTCTTT 491 Query 6577 AGTCCCGCTTTTA---AAAGTAATACACCT---TTTGCGAATACTAAAAAGCATGCTCGC 6630 | |||| | ||| ||| ||||||||| || || | ||| ||||| Sbjct 492 AATCCCATTATTAGTTAAA--AATACACCTAAAAGTGAGAGAAGCAAA---CATGCAAAA 546 Query 6631 GATCACATAGCTGTTTCTAATGTGAAAACAGACAGACACACAAGTGAGAAAATCGTTACA 6690 || || | || |||||||||| ||||| || ||| | | ||| ||| || ||| Sbjct 547 GACCATGTTGCAATTTCTAATGTCAAAACTGATAGAGATTCTTATGAAAAATATGTAACA 606 Query 6691 ATTGGTTACGCTAAAGGCGTCTCACATCGTATTCATGCAACAGAATTTGGAACAATGTAC 6750 | ||||| | ||||| ||| | ||||||| | ||||||||||| ||||| Sbjct 607 GTAGGTTATGAAAAAGGATATAGTCATAGAATTCATGTCATTGAATTTGGAACCATGTAT 666 Query 6751 CAAAAACCACAATTGTTTATAACAAAAACAGAAAAGCAAGGGAAAAACAAAGTT 6804 |||||||||||||||||| | || |||| ||||| || | | ||||| |||| Sbjct 667 CAAAAACCACAATTGTTTGTCACTAAAAGTGAAAAAGAACGTAGAAACATAGTT 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132323994828550