Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq884 118 1e-21
seq208 118 1e-21
seq341 116 4e-21
seq3178 114 1e-20
seq71 114 1e-20
seq1493 113 5e-20
seq564 113 5e-20
seq186 111 2e-19
seq22 111 2e-19
seq10 111 2e-19
seq147 107 2e-18
seq4978 105 8e-18
seq251 105 8e-18
seq93 105 8e-18
seq2 102 9e-17
seq257 98.7 1e-15
seq1991 93.3 5e-14
>seq884
Length=173229
Score = 118 bits (130), Expect = 1e-21
Identities = 78/85 (92%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 38177 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 38236
Query 60116 CTCACCACTATACTACCGAGGATTG 60140
|| ||||||||||||||||||||||
Sbjct 38237 CTTACCACTATACTACCGAGGATTG 38261
Score = 116 bits (128), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct 2481 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 2540
Query 60115 ACTCACCACTATACTACCGAGGATTG 60140
||| ||||||||||||||||||||||
Sbjct 2541 ACTTACCACTATACTACCGAGGATTG 2566
Score = 116 bits (128), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct 7111 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7052
Query 60115 ACTCACCACTATACTACCGAGGATTG 60140
||| ||||||||||||||||||||||
Sbjct 7051 ACTTACCACTATACTACCGAGGATTG 7026
>seq208
Length=594663
Score = 118 bits (130), Expect = 1e-21
Identities = 78/85 (92%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 1018 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1077
Query 60116 CTCACCACTATACTACCGAGGATTG 60140
|| ||||||||||||||||||||||
Sbjct 1078 CTTACCACTATACTACCGAGGATTG 1102
>seq341
Length=494976
Score = 116 bits (128), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct 193757 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 193698
Query 60115 ACTCACCACTATACTACCGAGGATTG 60140
||| ||||||||||||||||||||||
Sbjct 193697 ACTTACCACTATACTACCGAGGATTG 193672
Score = 113 bits (124), Expect = 5e-20
Identities = 77/86 (90%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct 231038 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 230979
Query 60115 ACTCACCACTATACTACCGAGGATTG 60140
||| ||||||||||||||||||| ||
Sbjct 230978 ACTTACCACTATACTACCGAGGACTG 230953
Score = 113 bits (124), Expect = 5e-20
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 235435 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 235494
Query 60116 CTCACCACTATACTACCGAGGA 60137
|| |||||||||||||||||||
Sbjct 235495 CTTACCACTATACTACCGAGGA 235516
Score = 111 bits (122), Expect = 2e-19
Identities = 72/79 (91%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 189124 TTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 189183
Query 60122 ACTATACTACCGAGGATTG 60140
|||||||||||||||||||
Sbjct 189184 ACTATACTACCGAGGATTG 189202
>seq3178
Length=39119
Score = 114 bits (126), Expect = 1e-20
Identities = 77/85 (91%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 3456 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 3515
Query 60116 CTCACCACTATACTACCGAGGATTG 60140
|| ||||||||||||||||||| ||
Sbjct 3516 CTTACCACTATACTACCGAGGACTG 3540
>seq71
Length=1863596
Score = 114 bits (126), Expect = 1e-20
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1289175 AAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1289116
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 1289115 TTACCACTATACTACCGAGGA 1289095
>seq1493
Length=111453
Score = 113 bits (124), Expect = 5e-20
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 104106 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 104047
Query 60116 CTCACCACTATACTACCGAGGA 60137
|| |||||||||||||||||||
Sbjct 104046 CTTACCACTATACTACCGAGGA 104025
>seq564
Length=290911
Score = 113 bits (124), Expect = 5e-20
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||||| | ||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 175229 AAAAATTTCCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 175288
Query 60116 CTCACCACTATACTACCGAGGATT 60139
|| |||||||||||||||||||||
Sbjct 175289 CTTACCACTATACTACCGAGGATT 175312
>seq186
Length=692473
Score = 111 bits (122), Expect = 2e-19
Identities = 77/85 (91%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGG-TCTCCCGCGTGACAGGCGGACAT 60114
|||||||||| ||| |||| ||||||||||||| || ||||||||||||||||||| ||
Sbjct 111252 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGGTCTCCCGCGTGACAGGCGGGGAT 111311
Query 60115 ACTCACCACTATACTACCGAGGATT 60139
||| |||||||||||||||||||||
Sbjct 111312 ACTTACCACTATACTACCGAGGATT 111336
>seq22
Length=1296824
Score = 111 bits (122), Expect = 2e-19
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 740745 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 740686
Query 60117 TCACCACTATACTACCGAGGATTG 60140
| ||||||||||||||||||| ||
Sbjct 740685 TTACCACTATACTACCGAGGACTG 740662
Score = 111 bits (122), Expect = 2e-19
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 752231 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 752172
Query 60117 TCACCACTATACTACCGAGGATTG 60140
| ||||||||||||||||||| ||
Sbjct 752171 TTACCACTATACTACCGAGGACTG 752148
>seq10
Length=3073041
Score = 111 bits (122), Expect = 2e-19
Identities = 73/81 (90%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 709856 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 709797
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 709796 TTACCACTATACTACCGAGGA 709776
>seq147
Length=672183
Score = 107 bits (118), Expect = 2e-18
Identities = 71/79 (90%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118
||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 128467 AAATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 128408
Query 60119 ACCACTATACTACCGAGGA 60137
|||||||||||||||||||
Sbjct 128407 ACCACTATACTACCGAGGA 128389
>seq4978
Length=4776
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||| || | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1908 AAATATCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1849
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 1848 TTACCACTATACTACCGAGGA 1828
>seq251
Length=308917
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||| || | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 134350 AAATATCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 134291
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 134290 TTACCACTATACTACCGAGGA 134270
>seq93
Length=972031
Score = 105 bits (116), Expect = 8e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119
|||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 74711 AATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTA 74652
Query 60120 CCACTATACTACCGAGGA 60137
||||||||||||||||||
Sbjct 74651 CCACTATACTACCGAGGA 74634
>seq2
Length=2384549
Score = 102 bits (112), Expect = 9e-17
Identities = 75/87 (86%), Gaps = 3/87 (3%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA- 60115
||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 446127 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 446186
Query 60116 --CTCACCACTATACTACCGAGGATTG 60140
|| ||||||||||||||||||| ||
Sbjct 446187 GTCTTACCACTATACTACCGAGGACTG 446213
>seq257
Length=825446
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 595561 CTCCCCGCCTGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 595620
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 595621 TACTACCGAGGA 595632
>seq1991
Length=14245
Score = 93.3 bits (102), Expect = 5e-14
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||| ||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 12001 CTCCCCGGCGGGGAAACGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 12060
Query 60126 TACTACCGA 60134
|||||||||
Sbjct 12061 TACTACCGA 12069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571646590799000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |