Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq884 118 1e-21 seq208 118 1e-21 seq341 116 4e-21 seq3178 114 1e-20 seq71 114 1e-20 seq1493 113 5e-20 seq564 113 5e-20 seq186 111 2e-19 seq22 111 2e-19 seq10 111 2e-19 seq147 107 2e-18 seq4978 105 8e-18 seq251 105 8e-18 seq93 105 8e-18 seq2 102 9e-17 seq257 98.7 1e-15 seq1991 93.3 5e-14 >seq884 Length=173229 Score = 118 bits (130), Expect = 1e-21 Identities = 78/85 (92%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 38177 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 38236 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 || |||||||||||||||||||||| Sbjct 38237 CTTACCACTATACTACCGAGGATTG 38261 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 2481 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 2540 Query 60115 ACTCACCACTATACTACCGAGGATTG 60140 ||| |||||||||||||||||||||| Sbjct 2541 ACTTACCACTATACTACCGAGGATTG 2566 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 7111 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7052 Query 60115 ACTCACCACTATACTACCGAGGATTG 60140 ||| |||||||||||||||||||||| Sbjct 7051 ACTTACCACTATACTACCGAGGATTG 7026 >seq208 Length=594663 Score = 118 bits (130), Expect = 1e-21 Identities = 78/85 (92%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 1018 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1077 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 || |||||||||||||||||||||| Sbjct 1078 CTTACCACTATACTACCGAGGATTG 1102 >seq341 Length=494976 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 193757 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 193698 Query 60115 ACTCACCACTATACTACCGAGGATTG 60140 ||| |||||||||||||||||||||| Sbjct 193697 ACTTACCACTATACTACCGAGGATTG 193672 Score = 113 bits (124), Expect = 5e-20 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 231038 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 230979 Query 60115 ACTCACCACTATACTACCGAGGATTG 60140 ||| ||||||||||||||||||| || Sbjct 230978 ACTTACCACTATACTACCGAGGACTG 230953 Score = 113 bits (124), Expect = 5e-20 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 235435 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 235494 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 235495 CTTACCACTATACTACCGAGGA 235516 Score = 111 bits (122), Expect = 2e-19 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 189124 TTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 189183 Query 60122 ACTATACTACCGAGGATTG 60140 ||||||||||||||||||| Sbjct 189184 ACTATACTACCGAGGATTG 189202 >seq3178 Length=39119 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 3456 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 3515 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 || ||||||||||||||||||| || Sbjct 3516 CTTACCACTATACTACCGAGGACTG 3540 >seq71 Length=1863596 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1289175 AAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1289116 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1289115 TTACCACTATACTACCGAGGA 1289095 >seq1493 Length=111453 Score = 113 bits (124), Expect = 5e-20 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 104106 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 104047 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 104046 CTTACCACTATACTACCGAGGA 104025 >seq564 Length=290911 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||| | ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 175229 AAAAATTTCCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 175288 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || ||||||||||||||||||||| Sbjct 175289 CTTACCACTATACTACCGAGGATT 175312 >seq186 Length=692473 Score = 111 bits (122), Expect = 2e-19 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGG-TCTCCCGCGTGACAGGCGGACAT 60114 |||||||||| ||| |||| ||||||||||||| || ||||||||||||||||||| || Sbjct 111252 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGGTCTCCCGCGTGACAGGCGGGGAT 111311 Query 60115 ACTCACCACTATACTACCGAGGATT 60139 ||| ||||||||||||||||||||| Sbjct 111312 ACTTACCACTATACTACCGAGGATT 111336 >seq22 Length=1296824 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 740745 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 740686 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 740685 TTACCACTATACTACCGAGGACTG 740662 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 752231 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 752172 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 752171 TTACCACTATACTACCGAGGACTG 752148 >seq10 Length=3073041 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 709856 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 709797 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 709796 TTACCACTATACTACCGAGGA 709776 >seq147 Length=672183 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 128467 AAATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 128408 Query 60119 ACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 128407 ACCACTATACTACCGAGGA 128389 >seq4978 Length=4776 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1908 AAATATCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1849 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1848 TTACCACTATACTACCGAGGA 1828 >seq251 Length=308917 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 134350 AAATATCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 134291 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 134290 TTACCACTATACTACCGAGGA 134270 >seq93 Length=972031 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 |||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| | Sbjct 74711 AATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTA 74652 Query 60120 CCACTATACTACCGAGGA 60137 |||||||||||||||||| Sbjct 74651 CCACTATACTACCGAGGA 74634 >seq2 Length=2384549 Score = 102 bits (112), Expect = 9e-17 Identities = 75/87 (86%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA- 60115 ||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 446127 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 446186 Query 60116 --CTCACCACTATACTACCGAGGATTG 60140 || ||||||||||||||||||| || Sbjct 446187 GTCTTACCACTATACTACCGAGGACTG 446213 >seq257 Length=825446 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 595561 CTCCCCGCCTGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 595620 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 595621 TACTACCGAGGA 595632 >seq1991 Length=14245 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||| ||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 12001 CTCCCCGGCGGGGAAACGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 12060 Query 60126 TACTACCGA 60134 ||||||||| Sbjct 12061 TACTACCGA 12069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571646590799000