Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_002486.1 Length=45636 Score E Sequences producing significant alignments: (Bits) Value seq3883 201 3e-47 seq3262 100 8e-17 >seq3883 Length=4185 Score = 201 bits (222), Expect = 3e-47 Identities = 403/592 (68%), Gaps = 14/592 (2%) Strand=Plus/Plus Query 24893 ACCGAAGACGAAAATATTATACTCTTGTTTCGCTTGCATTCAAGAATCTAAAGAATCCGA 24952 ||| || || ||| ||||| ||||| || || || ||||| |||||||| || || Sbjct 136 ACCCAAAACTAAAGAGTTATATAGTTGTTATGCATGTATCCAAGATTCTAAAGAGTCTGA 195 Query 24953 CACTCAAACGAATCTCAATACAGGTAGCAAATTCATTAAAACTATTATTATCAGAGATAC 25012 || ||||| | | | ||||||||||| || || || |||||| ||||||| ||||| | Sbjct 196 TACGCAAACAAGTATTAATACAGGTAGTAAGTTTATAAAAACTTTTATTATAAGAGACCC 255 Query 25013 ACGAGGTGATTATAAACCAACAAATAAGCATTACGTCTTGCATGAAGGGCAAAGGTTTAA 25072 |||||||||||||||| | ||||||||||| || |||| ||||| | | | | Sbjct 256 TAGAGGTGATTATAAACCTAGTAATAAGCATTATGTTATGCACGAAGGTATTCGCTATGA 315 Query 25073 CATCAAATATGTAAAGCCAGATTATCAAGATAAATCTTATTTGCGTATCTATGGCGAGGT 25132 | || ||| | ||||||||||||| || ||||| | || || ||||||| ||||| Sbjct 316 TGTGAAGTATTTTAAGCCAGATTATCGTGACAAATCATTCTTACGAGTCTATGGTGAGGT 375 Query 25133 GGTCATTTAATGGGAGCAAGAATTGAAAGTAATAATATTGAACAAGGTTTGAAAAATGCA 25192 | | || || |||| || | |||||||| |||| || ||| || || ||||| | Sbjct 376 GTTAATATAGTGGGTGCTAAAATTGAAAAAAATACAATAGAATCTGGATT-AAAAAGAGA 434 Query 25193 GTTTTAAAAATGAATT--TAAATAG--TAATGTAATTGTCAAAGCTGGGGCTATGTCATT 25248 ||| | || || | || | ||| | || | | || || ||| || || Sbjct 435 GTT---ACTATCTTTTCCGAGATTGCAGAATAAAGTTTTAAGAGAAGGTGCTTCTTCTTT 491 Query 25249 AGTCCCACTTTTAAAAAGTAATACACCT---TTTGCGAATACTAAAAAGCATGCTCGCGA 25305 | ||||| | ||| | ||||||||| || || | ||| ||||| || Sbjct 492 AATCCCATTATTAGTTAAAAATACACCTAAAAGTGAGAGAAGCAAA---CATGCAAAAGA 548 Query 25306 TCACATAGCTGTTTCTAATGTGAAAACAGACAGACACACAAGTGAGAAAATCGTTACAAT 25365 || | || |||||||||| ||||| || ||| | | ||| ||| || ||| | Sbjct 549 CCATGTTGCAATTTCTAATGTCAAAACTGATAGAGATTCTTATGAAAAATATGTAACAGT 608 Query 25366 TGGTTACGCTAAAGGCGTCTCACATCGTATTCATGCAACAGAATTTGGAACAATGTACCA 25425 ||||| | ||||| ||| | ||||||| | ||||||||||| ||||| || Sbjct 609 AGGTTATGAAAAAGGATATAGTCATAGAATTCATGTCATTGAATTTGGAACCATGTATCA 668 Query 25426 AAAACCACAATTGTTTATAACAAAAACAGAAAAGCAAGGGAAAAACAAAGTT 25477 |||||||||||||||| | || |||| ||||| || | | ||||| |||| Sbjct 669 AAAACCACAATTGTTTGTCACTAAAAGTGAAAAAGAACGTAGAAACATAGTT 720 >seq3262 Length=4198 Score = 100 bits (110), Expect = 8e-17 Identities = 127/169 (75%), Gaps = 7/169 (4%) Strand=Plus/Minus Query 22975 AATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCT-TGGTCTTCGA 23033 ||| |||||||||| | ||| ||||| | ||||| | | ||||||| | |||||| Sbjct 906 AATTCTTCGTATTGT-TAGCT-CGCTTGCTTAGGGGACAGCTTCAGCCTGTAGTCTTCAG 849 Query 23034 CTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACT 23093 || | ||| ||||||| | ||||||| | ||||| ||||| | ||||| | ||||| Sbjct 848 CTCGTCCTGTTCCCTCAAGCGTCTCGCT-TAAATACGTGGTATTCATATGTAGTATTACT 790 Query 23094 TTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAATTTAATAAATAC 23142 || ||| |||| ||||||||| ||||||||||| ||| ||||||| Sbjct 789 TTTAAACACTT---AAAAATAAGGTTCTTTCGTATAAATTAGTAAATAC 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145872144578300