Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq86 102 1e-16
seq276 95.1 2e-14
seq328 87.8 3e-12
seq485 86.0 9e-12
>seq86
Length=815150
Score = 102 bits (112), Expect = 1e-16
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| ||||| | ||||| || | ||||||||||| || || ||||||||
Sbjct 596441 CCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 596500
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||| | || ||| || | |||||| || ||||| ||||| | ||||||||||||||||
Sbjct 596501 AAAGTACGGCCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAGGA 596560
Query 146171 ATTCCT 146176
|| |||
Sbjct 596561 ATACCT 596566
>seq276
Length=376631
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/230 (67%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||||| ||| | | ||| || || | || |||||||| |||||||| || |
Sbjct 241196 TTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAG 241137
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| | || | || ||| || ||||| ||||| |||||||| |||| || ||||| || |
Sbjct 241136 ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTG 241077
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
| ||||||||||| ||||| || |||||| |||||
Sbjct 241076 GGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTA 241017
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
|||| | ||||| ||||| || || | ||||| | || |||||||||
Sbjct 241016 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240967
Score = 93.3 bits (102), Expect = 6e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||||| ||| | | ||| || || | || |||||||| |||||||| || |
Sbjct 240740 TTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGG 240681
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| | || | || ||| || ||||| ||||| |||||||| |||| || ||||| || |
Sbjct 240680 ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTG 240621
Query 146169 GAATTCCTTCTTTATCTTG 146187
| ||||||||||| |||||
Sbjct 240620 GGATTCCTTCTTTGTCTTG 240602
Score = 93.3 bits (102), Expect = 6e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||||| ||| | | ||| || || | || |||||||| |||||||| || |
Sbjct 240968 TTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGG 240909
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| | || | || ||| || ||||| ||||| |||||||| |||| || ||||| || |
Sbjct 240908 ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTG 240849
Query 146169 GAATTCCTTCTTTATCTTG 146187
| ||||||||||| |||||
Sbjct 240848 GGATTCCTTCTTTGTCTTG 240830
>seq328
Length=376668
Score = 87.8 bits (96), Expect = 3e-12
Identities = 143/198 (72%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 28087 ATGTTTTGGGCaaaaaaaTTAATTGAATGGACTAATTCTCCTCA-AGATGCCATCGATAA 28145
|||| ||||||||||| || | ||||||||| || |||| | ||| || | | |
Sbjct 44035 ATGTACTGGGCAAAAAAGATACTAGAATGGACTGATACTCCAGATAGA-GCACTAGCAGA 44093
Query 28146 AACAATTTATCTTAATGATAAATATTTTTTCGATGGATATGATCCTATGGGATATGTTA- 28204
|||||||||||||||| |||||| | ||||| ||| || | || | ||||
Sbjct 44094 TGCAATTTATCTTAATGACAAATATAGCATGGATGGTCGTGACCCGAGTGGTTTTGTTGG 44153
Query 28205 ATATATTATGGTCAATAGGAGGATTGCATGA-CAGAGCATTCAAAGAAAGAGAAATGTAT 28263
|| ||| ||||||||| | || | ||||| ||| | || |||||||||||||| | |
Sbjct 44154 ATGTATG-TGGTCAATATGTGGTATTCATGATCAGGG-ATGGAAAGAAAGAGAAATTTTT 44211
Query 28264 GGAAAAATAAGATTTATG 28281
|||||||| || | ||||
Sbjct 44212 GGAAAAATTAGGTATATG 44229
>seq485
Length=275053
Score = 86.0 bits (94), Expect = 9e-12
Identities = 89/116 (77%), Gaps = 3/116 (3%)
Strand=Plus/Minus
Query 176670 ATAAAATTTAAAATTTCATTAGTTATTACAACATTTTTCTTATTAAATAACGGAAACCA- 176728
||||| || |||| ||||||||||||| | |||||||| | |||||| ||||| ||
Sbjct 213514 ATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCAAATAATGGAAAGCAA 213455
Query 176729 --TATATCTTTAAACCAAGAACCTAGTTCTATATCATAATTATTATACGTTATAAA 176782
|||||||| |||||| |||| | || |||||| |||||||| |||||||
Sbjct 213454 TTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTATAATTTATAAA 213399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743304039136000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |