Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq86 102 1e-16 seq276 95.1 2e-14 seq328 87.8 3e-12 seq485 86.0 9e-12 >seq86 Length=815150 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | ||||| || | ||||||||||| || || |||||||| Sbjct 596441 CCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 596500 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || | |||||| || ||||| ||||| | |||||||||||||||| Sbjct 596501 AAAGTACGGCCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAGGA 596560 Query 146171 ATTCCT 146176 || ||| Sbjct 596561 ATACCT 596566 >seq276 Length=376631 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||| ||| | | ||| || || | || |||||||| |||||||| || | Sbjct 241196 TTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAG 241137 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | || ||| || ||||| ||||| |||||||| |||| || ||||| || | Sbjct 241136 ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTG 241077 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | ||||||||||| ||||| || |||||| ||||| Sbjct 241076 GGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTA 241017 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| | ||||| ||||| || || | ||||| | || ||||||||| Sbjct 241016 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240967 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||| ||| | | ||| || || | || |||||||| |||||||| || | Sbjct 240740 TTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGG 240681 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | || ||| || ||||| ||||| |||||||| |||| || ||||| || | Sbjct 240680 ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTG 240621 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||||||||| ||||| Sbjct 240620 GGATTCCTTCTTTGTCTTG 240602 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||| ||| | | ||| || || | || |||||||| |||||||| || | Sbjct 240968 TTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGG 240909 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | || ||| || ||||| ||||| |||||||| |||| || ||||| || | Sbjct 240908 ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTG 240849 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||||||||| ||||| Sbjct 240848 GGATTCCTTCTTTGTCTTG 240830 >seq328 Length=376668 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 28087 ATGTTTTGGGCaaaaaaaTTAATTGAATGGACTAATTCTCCTCA-AGATGCCATCGATAA 28145 |||| ||||||||||| || | ||||||||| || |||| | ||| || | | | Sbjct 44035 ATGTACTGGGCAAAAAAGATACTAGAATGGACTGATACTCCAGATAGA-GCACTAGCAGA 44093 Query 28146 AACAATTTATCTTAATGATAAATATTTTTTCGATGGATATGATCCTATGGGATATGTTA- 28204 |||||||||||||||| |||||| | ||||| ||| || | || | |||| Sbjct 44094 TGCAATTTATCTTAATGACAAATATAGCATGGATGGTCGTGACCCGAGTGGTTTTGTTGG 44153 Query 28205 ATATATTATGGTCAATAGGAGGATTGCATGA-CAGAGCATTCAAAGAAAGAGAAATGTAT 28263 || ||| ||||||||| | || | ||||| ||| | || |||||||||||||| | | Sbjct 44154 ATGTATG-TGGTCAATATGTGGTATTCATGATCAGGG-ATGGAAAGAAAGAGAAATTTTT 44211 Query 28264 GGAAAAATAAGATTTATG 28281 |||||||| || | |||| Sbjct 44212 GGAAAAATTAGGTATATG 44229 >seq485 Length=275053 Score = 86.0 bits (94), Expect = 9e-12 Identities = 89/116 (77%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 176670 ATAAAATTTAAAATTTCATTAGTTATTACAACATTTTTCTTATTAAATAACGGAAACCA- 176728 ||||| || |||| ||||||||||||| | |||||||| | |||||| ||||| || Sbjct 213514 ATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCAAATAATGGAAAGCAA 213455 Query 176729 --TATATCTTTAAACCAAGAACCTAGTTCTATATCATAATTATTATACGTTATAAA 176782 |||||||| |||||| |||| | || |||||| |||||||| ||||||| Sbjct 213454 TTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTATAATTTATAAA 213399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743304039136000