Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq276 105 4e-18
seq2302 95.1 8e-15
>seq276
Length=376631
Score = 105 bits (116), Expect = 4e-18
Identities = 143/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||||||| || || |||||||| | | |||| | || ||||| ||||| || || ||
Sbjct 241387 TTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAA 241328
Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315
||| | ||||| || || | ||| | || || ||||| || ||| ||||| | |
Sbjct 241327 AATTAATCGCTGTTGATCTGGTGGGATCCCT-TCTTTGTCTTGAAT-TTTAGCTTTCACA 241270
Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375
| | || || || | |||||| || |||| |||||||||||||| || || ||||||
Sbjct 241269 TTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTC 241210
Query 34376 ACAAAGATCTGCAT 34389
|||||||| |||||
Sbjct 241209 ACAAAGATTTGCAT 241196
Score = 102 bits (112), Expect = 5e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||||||| || || |||||||| | | |||| | || ||||| ||||| || || ||
Sbjct 240931 TTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAA 240872
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
||| | ||||| || || || | | || ||||| || ||| ||||| | ||
Sbjct 240871 AATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTTCACAT 240813
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || || || | |||||| || |||| |||||||||||||| || || |||||||
Sbjct 240812 TTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCA 240753
Query 34377 CAAAGATCTGCAT 34389
||||||| |||||
Sbjct 240752 CAAAGATTTGCAT 240740
Score = 102 bits (112), Expect = 5e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||||||| || || ||||| || | | |||| | || ||||| ||||| || || ||
Sbjct 241159 TTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAA 241100
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
||| | ||||| || || || | | || ||||| || ||| ||||| | ||
Sbjct 241099 AATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAAT-TTTCGCTTTCACAT 241041
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || ||||| | |||||| || |||| |||||||||||||| || || |||||||
Sbjct 241040 TTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCA 240981
Query 34377 CAAAGATCTGCAT 34389
||||||| |||||
Sbjct 240980 CAAAGATTTGCAT 240968
Score = 96.9 bits (106), Expect = 2e-15
Identities = 141/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||||||| || || |||||||| | |||| | || ||||| ||||| || || ||
Sbjct 241615 TTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAA 241556
Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315
||| | ||||| || || | ||| | || || ||||| || ||| ||||| | |
Sbjct 241555 AATTAATCGCTGTTGATCTGGTGGGATCCCT-TCTTTGTCTTGAAT-TTTAGCTTTCACA 241498
Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375
| | || || || | ||||| || |||| |||||||||||||| || || ||||||
Sbjct 241497 TTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTC 241438
Query 34376 ACAAAGATCTGCAT 34389
|||||||| |||||
Sbjct 241437 ACAAAGATTTGCAT 241424
Score = 95.1 bits (104), Expect = 8e-15
Identities = 139/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||||||| || || |||||||| | | |||| | || ||||| ||||| || || ||
Sbjct 240703 TTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAA 240644
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
||| | ||||| || || || | | || ||||| || ||| ||||| | ||
Sbjct 240643 AATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTTCACAT 240585
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || || || | ||||| || |||| || |||||||| || || ||||||||||
Sbjct 240584 TTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCA 240525
Query 34377 CAAAGATCTGCATC 34390
||||||| ||||||
Sbjct 240524 CAAAGATTTGCATC 240511
>seq2302
Length=121279
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | || ||||| ||| | ||| |||||| || ||||||||||||||
Sbjct 53648 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53707
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||| || || || || | || |||||||| ||
Sbjct 53708 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53767
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | || | || ||||| | |||||| ||
Sbjct 53768 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53827
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || || ||||| || || || ||||| |||||
Sbjct 53828 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | || ||||| ||| | ||| |||||| || ||||||||||||||
Sbjct 52964 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53023
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||| || || || || | || |||||||| ||
Sbjct 53024 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53083
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | || | || ||||| | ||||| ||
Sbjct 53084 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 53143
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || || ||||| || || || ||||| |||||
Sbjct 53144 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53190
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | || ||||| ||| | ||| |||||| || ||||||||||||||
Sbjct 53192 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53251
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||| || || || || | || |||||||| ||
Sbjct 53252 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53311
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | || | || ||||| | ||||| ||
Sbjct 53312 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 53371
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || || ||||| || || || ||||| |||||
Sbjct 53372 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | || ||||| ||| | ||| |||||| || ||||||||||||||
Sbjct 53420 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53479
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||| || || || || | || || ||||| ||
Sbjct 53480 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 53539
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | || | || ||||| | |||||| ||
Sbjct 53540 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53599
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || || ||||| || || || ||||| |||||
Sbjct 53600 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | || ||||| ||| | ||| |||||| || ||||||||||||||
Sbjct 53876 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53935
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||| || || || || | || || || || ||
Sbjct 53936 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 53995
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | || | || ||||| | |||||| ||
Sbjct 53996 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 54055
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || || ||||| || || || |||||||||||
Sbjct 54056 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | || ||||| ||| | ||| |||||| || ||||||||||||||
Sbjct 54104 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 54163
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||| || || || || | || || ||||| ||
Sbjct 54164 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 54223
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | || ||||| ||||| |||| || | || ||||| | ||||| ||
Sbjct 54224 ATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACC 54283
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || || ||||| || || |||||||| |||||
Sbjct 54284 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322977796748000
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