Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq35 132 4e-26 seq1042 129 5e-25 >seq35 Length=1961283 Score = 132 bits (146), Expect = 4e-26 Identities = 293/450 (65%), Gaps = 67/450 (15%) Strand=Plus/Minus Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||| || | ||||||||||| ||||| ||| || | |||||||| || ||||| || Sbjct 1197104 AAAAGTTAAACCTGGCATTAATCCTCTTTTCTTCAACCAAAATAATGCAGCAAAACTTCC 1197045 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404 ||| || ||||||||||||||||| ||||||||||| || | ||||| | ||| Sbjct 1197044 AGAGAAAAATATACCTTCAACTGCAGCAAATGCAACTAACCTTTCACCAAAAGTTGC--- 1196988 Query 16405 tttactttct---atccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 |||||| || |||||||| |||||||| ||| || | ||| ||||| |||| | Sbjct 1196987 TTTACTATCACTGATCCATTTAAGAGCCCAATCTGCCTTCTTTTTTACACACGGCATGGT 1196928 Query 16462 CTCTATTGCAT-------------------TAAATAAATAA------ttt---------- 16486 || || |||| |||| |||||| ||| Sbjct 1196927 TTCAATAGCATTAAATAAAAAGTCCCTAGATAAAAAAATAAAAAAAATTTAGTCATAAAT 1196868 Query 16487 ------------------------ttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 |||||||| ||| |||||| || || |||| | Sbjct 1196867 ATCAAGAAAAATTAACAAACTTACTTTTCTTTTGGGTCTTGAATATATGTGTCAATTAAT 1196808 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582 || ||||||||||||||||| ||||| ||||| ||| || || |||||||| |||||| Sbjct 1196807 AAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGGAACCCATAAAAACATCTA 1196748 Query 16583 GCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 || || | || ||| ||||| ||| | || ||||| | | ||||| || || || || Sbjct 1196747 GCCTCAGTTACTTGAACTTCTTGAG-AGAATCTTTCAACAAGATTTTCATTGACAATGCC 1196689 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTG 16671 ||| ||| |||||||| || | || ||| Sbjct 1196688 ATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659 >seq1042 Length=111944 Score = 129 bits (142), Expect = 5e-25 Identities = 141/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 16487 ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 ||||||||| ||| |||||| |||||||||| ||| ||||||||||||||||| ||| Sbjct 80515 TTTTCTTTGGGGTCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATA 80574 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGA 16605 ||||| || ||| || || |||||||| |||||||| || | || ||| ||||| || Sbjct 80575 TTCTCTATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGA 80634 Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 | |||| | || | | ||||| ||||||| |||| ||| || ||||| || || Sbjct 80635 G-AAAATCGTTTAACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAG 80693 Query 16666 TATGT 16670 ||||| Sbjct 80694 TATGT 80698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462373680005000