Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq35 132 4e-26
seq1042 129 5e-25
>seq35
Length=1961283
Score = 132 bits (146), Expect = 4e-26
Identities = 293/450 (65%), Gaps = 67/450 (15%)
Strand=Plus/Minus
Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344
||| || | ||||||||||| ||||| ||| || | |||||||| || ||||| ||
Sbjct 1197104 AAAAGTTAAACCTGGCATTAATCCTCTTTTCTTCAACCAAAATAATGCAGCAAAACTTCC 1197045
Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404
||| || ||||||||||||||||| ||||||||||| || | ||||| | |||
Sbjct 1197044 AGAGAAAAATATACCTTCAACTGCAGCAAATGCAACTAACCTTTCACCAAAAGTTGC--- 1196988
Query 16405 tttactttct---atccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461
|||||| || |||||||| |||||||| ||| || | ||| ||||| |||| |
Sbjct 1196987 TTTACTATCACTGATCCATTTAAGAGCCCAATCTGCCTTCTTTTTTACACACGGCATGGT 1196928
Query 16462 CTCTATTGCAT-------------------TAAATAAATAA------ttt---------- 16486
|| || |||| |||| |||||| |||
Sbjct 1196927 TTCAATAGCATTAAATAAAAAGTCCCTAGATAAAAAAATAAAAAAAATTTAGTCATAAAT 1196868
Query 16487 ------------------------ttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522
|||||||| ||| |||||| || || |||| |
Sbjct 1196867 ATCAAGAAAAATTAACAAACTTACTTTTCTTTTGGGTCTTGAATATATGTGTCAATTAAT 1196808
Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582
|| ||||||||||||||||| ||||| ||||| ||| || || |||||||| ||||||
Sbjct 1196807 AAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGGAACCCATAAAAACATCTA 1196748
Query 16583 GCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641
|| || | || ||| ||||| ||| | || ||||| | | ||||| || || || ||
Sbjct 1196747 GCCTCAGTTACTTGAACTTCTTGAG-AGAATCTTTCAACAAGATTTTCATTGACAATGCC 1196689
Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTG 16671
||| ||| |||||||| || | || |||
Sbjct 1196688 ATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659
>seq1042
Length=111944
Score = 129 bits (142), Expect = 5e-25
Identities = 141/185 (76%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 16487 ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546
||||||||| ||| |||||| |||||||||| ||| ||||||||||||||||| |||
Sbjct 80515 TTTTCTTTGGGGTCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATA 80574
Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGA 16605
||||| || ||| || || |||||||| |||||||| || | || ||| ||||| ||
Sbjct 80575 TTCTCTATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGA 80634
Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665
| |||| | || | | ||||| ||||||| |||| ||| || ||||| || ||
Sbjct 80635 G-AAAATCGTTTAACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAG 80693
Query 16666 TATGT 16670
|||||
Sbjct 80694 TATGT 80698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462373680005000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |