Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq35 152 5e-32 seq1042 118 1e-21 >seq35 Length=1961283 Score = 152 bits (168), Expect = 5e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||| || || || ||| ||||| |||||||| ||||||| ||| | Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | |||||||||| |||||| || ||| || || ||||| || |||||||||||||| | Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | ||| | ||| ||||| | |||||| | | |||||||| |||||| || | Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 || ||||| | | | ||| ||||||||||||||||||||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 1196909 Score = 138 bits (152), Expect = 1e-27 Identities = 169/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 14468 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCT 14527 |||||| | ||||| ||||| | ||||||||||||||| || ||||| |||||||| | Sbjct 1196830 CTTGAA-TATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 14528 ATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT-GAGTAAAATCTTTC 14586 || || || ||||||||||||||||| || | ||| || ||| ||| | |||||||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AGAATCTTTC 1196713 Query 14587 GGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT 14646 | | ||||||||| || || ||||| ||| ||||||||||| |||| || || Sbjct 1196712 AACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATAT 1196653 Query 14647 AAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCT 14693 ||||| |||| |||| | | ||| ||||||| | | ||||| Sbjct 1196652 AAAGTGACGCTCATCATCAGTCAATTTCATCCAATCTTCAAGATCCT 1196606 >seq1042 Length=111944 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||| |||||||| || | ||||||||||||||| || ||||| || || || ||| || Sbjct 80532 AATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATTATTTG 80591 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCA 14591 || ||||||||||||||||| || | ||| || || |||| |||||| || | | Sbjct 80592 GAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AAAATCGTTTAACAA 80650 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651 ||||||| ||||||| |||| ||| || |||||||| | ||||| ||||||| Sbjct 80651 GATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATAAAGT 80710 Query 14652 ATTGCTCTTCAT 14663 ||||||||| Sbjct 80711 GACGCTCTTCAT 80722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482201348519000