Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq35 152 5e-32
seq1042 118 1e-21
>seq35
Length=1961283
Score = 152 bits (168), Expect = 5e-32
Identities = 168/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||| || || || ||| ||||| |||||||| ||||||| ||| |
Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| |||||||||| |||||| || ||| || || ||||| || |||||||||||||| |
Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013
Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405
| | ||| | ||| ||||| | |||||| | | |||||||| |||||| || |
Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953
Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449
|| ||||| | | | ||| |||||||||||||||||||||
Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 1196909
Score = 138 bits (152), Expect = 1e-27
Identities = 169/227 (74%), Gaps = 3/227 (1%)
Strand=Plus/Minus
Query 14468 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCT 14527
|||||| | ||||| ||||| | ||||||||||||||| || ||||| |||||||| |
Sbjct 1196830 CTTGAA-TATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772
Query 14528 ATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT-GAGTAAAATCTTTC 14586
|| || || ||||||||||||||||| || | ||| || ||| ||| | ||||||||
Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AGAATCTTTC 1196713
Query 14587 GGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT 14646
| | ||||||||| || || ||||| ||| ||||||||||| |||| || ||
Sbjct 1196712 AACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATAT 1196653
Query 14647 AAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCT 14693
||||| |||| |||| | | ||| ||||||| | | |||||
Sbjct 1196652 AAAGTGACGCTCATCATCAGTCAATTTCATCCAATCTTCAAGATCCT 1196606
>seq1042
Length=111944
Score = 118 bits (130), Expect = 1e-21
Identities = 143/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532
||| |||||||| || | ||||||||||||||| || ||||| || || || ||| ||
Sbjct 80532 AATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATTATTTG 80591
Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCA 14591
|| ||||||||||||||||| || | ||| || || |||| |||||| || | |
Sbjct 80592 GAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AAAATCGTTTAACAA 80650
Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651
||||||| ||||||| |||| ||| || |||||||| | ||||| |||||||
Sbjct 80651 GATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATAAAGT 80710
Query 14652 ATTGCTCTTCAT 14663
|||||||||
Sbjct 80711 GACGCTCTTCAT 80722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482201348519000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |