Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq276 96.9 3e-15
>seq276
Length=376631
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||||| | |||||||||||||||||| ||||| || |||||||
Sbjct 240967 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGA 240908
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | |||||||||||| || || ||| | || | || |||||||| ||
Sbjct 240907 TAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 240848
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||| || || ||||| | || || || | | ||| || ||| | ||
Sbjct 240847 GATTCCTTCTTTGTCTTGAATTT-TAGCTTTCACATTTTCAATAGAGTCTGACGATTCTA 240789
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | |||||| ||||||| || | ||||| ||||| |||||||||
Sbjct 240788 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240739
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||||| | |||||||||||||||||| ||||| || |||||||
Sbjct 241423 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGA 241364
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | |||||||||||| || || ||| | || | || |||||||| ||
Sbjct 241363 TAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 241304
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||| || || ||||| | || || || | | ||| || ||| | ||
Sbjct 241303 GATCCCTTCTTTGTCTTGAATTT-TAGCTTTCACATTTTCAATAGAGTCTGACGATTCTA 241245
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | |||||| ||||||| || | ||||| ||||| |||||||||
Sbjct 241244 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 241195
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||||| | |||||||||||||||||| ||||| || |||||||
Sbjct 241651 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGA 241592
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | |||||||||||| || || ||| | || | || |||||||| ||
Sbjct 241591 TAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 241532
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||| || || ||||| | || || || | | ||| || ||| | ||
Sbjct 241531 GATCCCTTCTTTGTCTTGAATTT-TAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTA 241473
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | |||||| ||||||| || | ||||| ||||| |||||||||
Sbjct 241472 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 241423
Score = 89.7 bits (98), Expect = 4e-13
Identities = 164/238 (69%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||||| | |||||||||||||||||| ||||| || |||||||
Sbjct 240739 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGA 240680
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | |||||||||||| || || ||| | || | || |||||||| ||
Sbjct 240679 TAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 240620
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||| || || ||||| | || || || | | ||| || ||| | ||
Sbjct 240619 GATTCCTTCTTTGTCTTGAATTT-TAGCTTTCACATTTTCAATAGAGTCTGATGATTCTA 240561
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334
||| | || ||| |||| || || | ||||| ||||| |||||||| || | |||
Sbjct 240560 CTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATCTTGAGACT 240503
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | ||||| | |||||||||||||||||| ||||| || ||||| |
Sbjct 241195 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGA 241136
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | |||||||||||| || || ||| | || | || |||||||| ||
Sbjct 241135 TAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 241076
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||||| || || ||||| | || || || | | ||| || || | ||
Sbjct 241075 GATTCCTTCTTTGTCTTGAATTT-TCGCTTTCACATTTTCAATAGAATCTGACGATTCTA 241017
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | |||||| ||||||| || | ||||| ||||| |||||||||
Sbjct 241016 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379233388624125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |