Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq276 96.9 3e-15 >seq276 Length=376631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||||| | |||||||||||||||||| ||||| || ||||||| Sbjct 240967 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGA 240908 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||| || || ||| | || | || |||||||| || Sbjct 240907 TAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 240848 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | || || || | | ||| || ||| | || Sbjct 240847 GATTCCTTCTTTGTCTTGAATTT-TAGCTTTCACATTTTCAATAGAGTCTGACGATTCTA 240789 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| ||||||| || | ||||| ||||| ||||||||| Sbjct 240788 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240739 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||||| | |||||||||||||||||| ||||| || ||||||| Sbjct 241423 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGA 241364 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||| || || ||| | || | || |||||||| || Sbjct 241363 TAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 241304 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | || || || | | ||| || ||| | || Sbjct 241303 GATCCCTTCTTTGTCTTGAATTT-TAGCTTTCACATTTTCAATAGAGTCTGACGATTCTA 241245 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| ||||||| || | ||||| ||||| ||||||||| Sbjct 241244 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 241195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||||| | |||||||||||||||||| ||||| || ||||||| Sbjct 241651 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGA 241592 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||| || || ||| | || | || |||||||| || Sbjct 241591 TAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 241532 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | || || || | | ||| || ||| | || Sbjct 241531 GATCCCTTCTTTGTCTTGAATTT-TAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTA 241473 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| ||||||| || | ||||| ||||| ||||||||| Sbjct 241472 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 241423 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||||| | |||||||||||||||||| ||||| || ||||||| Sbjct 240739 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGA 240680 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||| || || ||| | || | || |||||||| || Sbjct 240679 TAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 240620 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | || || || | | ||| || ||| | || Sbjct 240619 GATTCCTTCTTTGTCTTGAATTT-TAGCTTTCACATTTTCAATAGAGTCTGATGATTCTA 240561 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 ||| | || ||| |||| || || | ||||| ||||| |||||||| || | ||| Sbjct 240560 CTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATCTTGAGACT 240503 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||||| | |||||||||||||||||| ||||| || ||||| | Sbjct 241195 TCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGA 241136 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||| || || ||| | || | || |||||||| || Sbjct 241135 TAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGG 241076 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | || || || | | ||| || || | || Sbjct 241075 GATTCCTTCTTTGTCTTGAATTT-TCGCTTTCACATTTTCAATAGAATCTGACGATTCTA 241017 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| ||||||| || | ||||| ||||| ||||||||| Sbjct 241016 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379233388624125