Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq35 111 1e-19 seq231 96.9 3e-15 seq1042 86.0 6e-12 seq2302 84.2 2e-11 >seq35 Length=1961283 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| || || ||||| || || || ||||| ||||| || || ||| | || |||||| Sbjct 1196659 CACGTATTAGCATTTTTTGCTGCTTCAGATGGCATTGTCAATGAAAATCTTGTTGAAAGA 1196718 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || |||||||| ||||| || ||||| ||||| ||||| || || ||| | || Sbjct 1196719 TTCTCTCAAGAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGGTTCCAAATAATGATG 1196778 Query 57807 GAAAACGTGCATTCAGAAATGTAT 57830 ||||| | ||||||||||||||| Sbjct 1196779 GAAAATATACATTCAGAAATGTAT 1196802 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAA---AAAGCGCCACGGCCACGTTCGCCGAG 57971 ||||||||||| ||| | | |||||||| | | || | || || || | || Sbjct 1196946 AAGAAGGCAGATTGGGCTCTTAAATGGATCAGTGATAGT---AAAGCAACTTTTGGTGAA 1197002 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 ||| || | || || || || || ||||||||||| || || || || ||||| ||| || Sbjct 1197003 AGGTTAGTTGCATTTGCTGCAGTTGAAGGTATATTTTTCTCTGGAAGTTTTGCTGCATTA 1197062 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 |||||| |||||||| | || | ||||| || | || |||||||| ||| |||| || Sbjct 1197063 TTTTGGTTGAAGAAAAGAGGATTAATGCCAGGTTTAACTTTTAGCAATGAGCTGATTTCA 1197122 Query 58092 CGCGACGAGG 58101 | || |||| Sbjct 1197123 AGAGATGAGG 1197132 >seq231 Length=580210 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||||||||| || || || ||||| || || |||||| | || || || | Sbjct 341021 AACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCT 340962 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||||| |||||| | ||| || || ||||| | || ||||| Sbjct 340961 TCAGACACTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGAT 340902 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || || ||| | || ||||| ||||| ||| | ||||| | | | || || ||||| Sbjct 340901 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGA-TGGACGTACATTGTCTGATTA 340843 Query 31369 TAACATTCAAAA 31380 |||||| ||||| Sbjct 340842 TAACATCCAAAA 340831 >seq1042 Length=111944 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755 || ||||| || || || |||| || |||| || ||| | || || ||||||| ||| Sbjct 80690 GCATTTTTAGCTGCTTCAAATGGCATAGTTAGTGAAAATCTTGTTAAACGATTTTCTCAA 80631 Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 ||||| ||||| || ||||| ||||| ||||| || || ||| | || || || | Sbjct 80630 GAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGGTTCCAAATAATGATAGAGAATATA 80571 Query 57816 CATTCAGAAATGTAT 57830 ||||||||||||||| Sbjct 80570 CATTCAGAAATGTAT 80556 >seq2302 Length=121279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || ||||| || || || || | || || ||| | || Sbjct 52734 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATTACATTGGAAGTAGAATCTTCT 52675 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| || || | || ||||||||||| | || || |||||| Sbjct 52674 GATTCAATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 52615 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||||| || || || || || || | ||||| | | | || | ||| ||||| Sbjct 52614 CAACGTCTGATCTTTGCCGGAAAGCAACTTGAAGA-TGGACGTACCCTTTCCGACTATAA 52556 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||||||||| || ||||| |||| Sbjct 52555 CATTCAAAAAGAATCTACCCTTCACTTGGT 52526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445633087986000