Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq35 111 1e-19
seq231 96.9 3e-15
seq1042 86.0 6e-12
seq2302 84.2 2e-11
>seq35
Length=1961283
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| || || ||||| || || || ||||| ||||| || || ||| | || ||||||
Sbjct 1196659 CACGTATTAGCATTTTTTGCTGCTTCAGATGGCATTGTCAATGAAAATCTTGTTGAAAGA 1196718
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || |||||||| ||||| || ||||| ||||| ||||| || || ||| | ||
Sbjct 1196719 TTCTCTCAAGAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGGTTCCAAATAATGATG 1196778
Query 57807 GAAAACGTGCATTCAGAAATGTAT 57830
||||| | |||||||||||||||
Sbjct 1196779 GAAAATATACATTCAGAAATGTAT 1196802
Score = 91.5 bits (100), Expect = 1e-13
Identities = 135/190 (71%), Gaps = 6/190 (3%)
Strand=Plus/Plus
Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAA---AAAGCGCCACGGCCACGTTCGCCGAG 57971
||||||||||| ||| | | |||||||| | | || | || || || | ||
Sbjct 1196946 AAGAAGGCAGATTGGGCTCTTAAATGGATCAGTGATAGT---AAAGCAACTTTTGGTGAA 1197002
Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031
||| || | || || || || || ||||||||||| || || || || ||||| ||| ||
Sbjct 1197003 AGGTTAGTTGCATTTGCTGCAGTTGAAGGTATATTTTTCTCTGGAAGTTTTGCTGCATTA 1197062
Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091
|||||| |||||||| | || | ||||| || | || |||||||| ||| |||| ||
Sbjct 1197063 TTTTGGTTGAAGAAAAGAGGATTAATGCCAGGTTTAACTTTTAGCAATGAGCTGATTTCA 1197122
Query 58092 CGCGACGAGG 58101
| || ||||
Sbjct 1197123 AGAGATGAGG 1197132
>seq231
Length=580210
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
||||||||||||||||| || || || ||||| || || |||||| | || || || |
Sbjct 341021 AACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCT 340962
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| | |||||| |||||| | ||| || || ||||| | || |||||
Sbjct 340961 TCAGACACTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGAT 340902
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|| || ||| | || ||||| ||||| ||| | ||||| | | | || || |||||
Sbjct 340901 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGA-TGGACGTACATTGTCTGATTA 340843
Query 31369 TAACATTCAAAA 31380
|||||| |||||
Sbjct 340842 TAACATCCAAAA 340831
>seq1042
Length=111944
Score = 86.0 bits (94), Expect = 6e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755
|| ||||| || || || |||| || |||| || ||| | || || ||||||| |||
Sbjct 80690 GCATTTTTAGCTGCTTCAAATGGCATAGTTAGTGAAAATCTTGTTAAACGATTTTCTCAA 80631
Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815
||||| ||||| || ||||| ||||| ||||| || || ||| | || || || |
Sbjct 80630 GAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGGTTCCAAATAATGATAGAGAATATA 80571
Query 57816 CATTCAGAAATGTAT 57830
|||||||||||||||
Sbjct 80570 CATTCAGAAATGTAT 80556
>seq2302
Length=121279
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||||||||| || ||||| || || || || | || || ||| | ||
Sbjct 52734 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATTACATTGGAAGTAGAATCTTCT 52675
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| || || | || ||||||||||| | || || ||||||
Sbjct 52674 GATTCAATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 52615
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| ||||| || || || || || || | ||||| | | | || | ||| |||||
Sbjct 52614 CAACGTCTGATCTTTGCCGGAAAGCAACTTGAAGA-TGGACGTACCCTTTCCGACTATAA 52556
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||||||||||||||| || ||||| ||||
Sbjct 52555 CATTCAAAAAGAATCTACCCTTCACTTGGT 52526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445633087986000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |