Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq35 107 2e-18 seq1089 98.7 1e-15 seq474 98.7 1e-15 seq1042 95.1 2e-14 seq757 91.5 2e-13 >seq35 Length=1961283 Score = 107 bits (118), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||| | || || ||| || | || ||||||| || | || | Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | |||||||| | ||| || ||| || || || || ||||| ||||||||||| | Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013 Query 33724 CAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGG 33780 ||| | || || ||| || || || ||| ||||| || |||||||||| | Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828 |||||||||||||||| ||||| ||||| || |||||||| | | ||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 |||| || ||| || || || || | ||||||||||| ||||| || ||||| || Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || || || || || |||||||||||||| || | || |||||| | | |||| ||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 | | ||||||||| || || ||||| || |||||||| || ||||| || |||| Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652 Query 34023 AA 34024 || Sbjct 1196651 AA 1196650 >seq1089 Length=106908 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 ||||| || || ||||| ||||||||||||||||| || || || | ||||| ||||||| Sbjct 31595 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 31654 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 || || || || ||||| ||||| || | |||| ||||||||||||| ||||| Sbjct 31655 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 31713 >seq474 Length=173882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 ||||| || || ||||| ||||||||||||||||| || || || | ||||| ||||||| Sbjct 164767 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 164708 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 || || || || ||||| ||||| || | |||| ||||||||||||| ||||| Sbjct 164707 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 164649 >seq1042 Length=111944 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||||| ||| ||||| || || | ||||||||||| ||||| || || || || Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || || || || || |||||||||||||| || | || |||||| | ||||||||| Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 33963 GCTAAATTTTCATTCACTATTCCAT 33987 | | ||||||| | ||||| |||| Sbjct 80647 ACAAGATTTTCACTAACTATGCCAT 80671 >seq757 Length=226151 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62433 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62492 ||||| ||||| | || |||||||| || | ||||||||| ||||| ||||| ||||| Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815 Query 62493 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCC 62552 ||||| | || || |||||||| ||||| | | ||||| ||||||| |||| Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 204755 Query 62553 CAATTCCA 62560 |||||||| Sbjct 204754 CAATTCCA 204747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629629245174000