Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq1477 208 2e-49 >seq1477 Length=14545 Score = 208 bits (230), Expect = 2e-49 Identities = 397/585 (68%), Gaps = 21/585 (4%) Strand=Plus/Plus Query 30840 GAGGAGTCAGCATAATGGCAAAGATCGCCGGAACCTGtttttttAAAGTGGATGGTCAGC 30899 |||||| | |||||||| || || || ||| | ||| ||| | || || | | Sbjct 1 GAGGAGAGCGAATAATGGCCCGTATTGCTGGTACCACGTATTTCAAACTCGACGGGCTTC 60 Query 30900 AGTTATCGCTGACAGGTGGCATTGAAGTGCCGATGAACACCAATGTCCGGGATGATGTCG 30959 |||| ||||| || || || ||||||||||||||||||||||| || |||||||| Sbjct 61 AGTTGTCGCTTACTGGCGGTATTGAAGTGCCGATGAACACCAAGGTAAACGATGATGTGA 120 Query 30960 TCGGCATGGCTGGTGATGTGGATTACAAGGAGACCTGGCGGTCACCTTACGTTAAGGGCA 31019 ||||| | | |||| ||| || || || || || | || ||| |||| |||| Sbjct 121 TCGGCCTTGATGGTTCTGTTGACCGTAAAGAAACGCACCGCGCGCCCTACATTAAAGGCA 180 Query 31020 CGTTTAAAGTGCCCAAAAATTTTCCGGTCGACAAAATTACCGCCTCAGACCAGATGACGA 31079 | ||||||||||| || || ||| || |||||| |||| || ||| ||||| Sbjct 181 CCTTTAAAGTGCCTAAGGGCTTCCCGCTCAGCAAAATCACCGAGTCCGACAGCATGACCG 240 Query 31080 TTACTGCCGAGCTGGCAAACGGCATGGTGTATGTGCTTTCGGCGGCCTGGCTGCATGGCG 31139 |||||| || ||||| || || ||||||||| || | | ||||||||| ||| | Sbjct 241 GTACTGCTGAACTGGCGAATGGTCAGGTGTATGTCCTGACCGAAGCCTGGCTGTTTGGTG 300 Query 31140 AAGCAAACCATAATGCCGAAGAAGGTACGGCAGATCTTGAATTCCACGGCGAAGAGGGAG 31199 | || ||||| ||||| ||||| || |||| || |||||||||||||| || ||| Sbjct 301 AGGCCAACCACAATGCTGAAGAGGGCACGGTTGACCTTGAATTCCACGGTTCTGAAGGAT 360 Query 31200 GATATCAGTAATGAGCGTGACAGAAATTGTTTTaaaaaaaCCGGTGACAGCGCATAACGA 31259 || || |||| |||| | || | | ||||| | ||| || || Sbjct 361 TCTACCA---------GTGAAAGAATTGGTACTGACTAAACCCATTGTGGCGGCAAATGA 411 Query 31260 AACGCTGCATGTGCTGGAGTTGCGTGAACCCACGTATGACGAAATCGAGGCCCTGGGTTT 31319 ||||| ||||||||||| | || || || || ||||||||| | ||| | || | Sbjct 412 GACGCTTCATGTGCTGGAAATCCGCGAGCCAACTTATGACGAAGTTGAGCAGTTCGGCAT 471 Query 31320 TCCTTTCA-TTA-----TTTCCGGTGAGGGCAGTATTAAACTGGACAGCCAGGTGGCACT 31373 |||||||| || |||||||| || ||||||||| || || | || Sbjct 472 TCCTTTCAGCTACAACGAATCCGGTGA------AATGAAACTGGACTCCCGCGTCACGCT 525 Query 31374 GAAATATATCCCGCTGCTGGCGGGGATCCCGCGTTCATCGGCGGC 31418 ||||||||||||| | || || | ||||||||||| || || || Sbjct 526 GAAATATATCCCGGTTCTTGCAGCTATCCCGCGTTCTTCAGCAGC 570 Score = 188 bits (208), Expect = 2e-43 Identities = 807/1256 (64%), Gaps = 47/1256 (4%) Strand=Plus/Plus Query 36152 GAGCACCTTGAGCCTTATGGTTTTACATCTGCTGCACAGAACGGTGCTGAGGGCGTTGCT 36211 || || |||||||| ||||| ||||| || || |||| || ||| || |||| |||||| Sbjct 6648 GAACAACTTGAGCCCTATGGCTTTACGTCAGCAGCACTGAGCGGCGCGGAGGCCGTTGCG 6707 Query 36212 TTATTCCCGGCGGGCGATCGTTCTCATGGTGTGGTTGTGGTCGTGGCTGACAGACGTTAC 36271 | | | || |||||||| || || || || |||| || || || | || || Sbjct 6708 GCTTACTTTGATGGTGATCGTTCACACGGCGTTGTGTTGGTGGTCGCGGATCGTCGGTAT 6767 Query 36272 CGGTTGAAAGGACTGAAACGT--GGGGAAGTGGCGCTTTATGACGATCAGGGGCAATCCG 36329 ||| ||||||| || ||| || || || || || |||||||||| || | | || | Sbjct 6768 CGGCTGAAAGG-CTTAAA-GTCCGGTGAGGTTGCCATTTATGACGACCAACAGAAGTCGG 6825 Query 36330 TTGTCCTGACCCGTTCCGGTATTGTGGTGAACGGGGGCGGGAAGCCCATTATTTTTCAAA 36389 | |||||| || | || ||||| ||| | || ||||| || | || | || ||| Sbjct 6826 TAACCCTGACACGCACAGGGATTGTTGTGGATGGAGGCGGCAAACAGATCACCCTTAAAA 6885 Query 36390 ACGCGCCTAAAGCGCGCTTTGAAATGCCTGTCGAATCCACCGCTGATATTACTGACAATT 36449 |||| || || ||||||||||||||| | ||| |||| | | || |||||||| | Sbjct 6886 ACGCTCCAAAGGCGCGCTTTGAAATGGACATAGAAGCCACAGGCAACATCACTGACAACT 6945 Query 36450 GCGACAGTGGCGGACTCAGCATGCAGCAAATGCGGCAGACCTACAATGCCCACAAACACA 36509 | || |||||| | ||| || ||||| |||||| || | ||||| || | Sbjct 6946 GTGATTCTGGCGGCGTATCAATGGCCCAGATGCGTGTGACCTATAACGGGCACAAGCATA 7005 Query 36510 CCGAAAATGGTGATGGTGGTGGGATCACTGACACGCCAGATCAACCGATGGGCTGAAAAT 36569 || || ||||| ||||| || | || ||| | | |||| ||||| || ||| Sbjct 7006 AAGAGAACGGTGACGGTGGCGGCACTACGGACGCAACCCTGCAACAAATGGG-TG--AAT 7062 Query 36570 CATGAT------GATTAATGTTAACGGGCGAACCG--TGTCGACCGGGGCTTCGCTCGAC 36621 |||||| |||||||| || || ||| | || ||| ||| || ||| Sbjct 7063 CATGATCCTCACGATTAATGGCAA---GC-AACAGGCGGTTTACC--AACTT-ACT-GAC 7114 Query 36622 CTTCTGACGCGTGCTGTGATTATTTCGCTTTTTACCTGGCGGCGTGCAGGGCGTGATGAT 36681 | || || ||||||||| ||||||| || || |||||| | ||||| || ||| Sbjct 7115 CCGCTAACCCGTGCTGTGGTTATTTCTCTATTCACCTGGAGAAAAGCAGGCAAAGACGAT 7174 Query 36682 GATGCACCGCAGA--TATTTGGATGGTGGGGGGATACCTGGCCTACGGTTCAGAATGATC 36739 | ||| | | ||| | ||| |||||||| || || | || || || |||||||| | Sbjct 7175 G-TGC-CTGAAGAGTTCAATGGCTGGTGGGGCGACACGTTCCCCACTGTGCAGAATGACC 7232 Query 36740 GCACGGGGTCGCGTCTGTATCTGTTGCGACGCAGCAAGCTGACAAATAAAACCCCGCAGC 36799 | | || || || || ||| | | ||| || || ||||| | || |||| Sbjct 7233 GAATCGGCTCCCGCCTTTATTTACTTAAGCGCTCAAAACTTACAAACCAGACGCCGCTTA 7292 Query 36800 TTGCCAGAGATTATGCCCGTGAAGCGCTGGCGTGGATGGTGGAGGATGGTGTTGCTTCCC 36859 ||| | || || | ||||||||| |||| | || |||||||| || | | Sbjct 7293 AAGCCCGTGAGTACATCGCAGAAGCGCTGCAGTGGCTTACGGCTGATGGTGTGGCCGCGC 7352 Query 36860 GTCTTGATATTAACGCTGTCAGGACCGGGACAGACTCGCTGGCACTTGCCA---TTACCA 36916 | | || | | || ||| || | || | || || || ||| ||| Sbjct 7353 GGGTAGACGTCACTGCGCAAAGGCTTGGTATCAACGCCATGTCAGTTACCACGGTTATAC 7412 Query 36917 TTTACCAGCGTGACGGCAATATTCACAACATTATTTTTGATGATATCTGGAGTGAACTGA 36976 | | ||| ||||||| | | | || ||||||||| | ||||||||||| | Sbjct 7413 ATAAACAG---GACGGCACAACCCTGACGCTTTACTTTGATGATTTATGGAGTGAACTCA 7469 Query 36977 ATGGCTGACAGTCAGTTTTATCGCCCCGGCCTCCCGCAACTTATTTCTATGATCCGGAGC 37036 |||||||| || |||| ||||| |||||||| || || | | ||||| Sbjct 7470 ATGGCTGATAGCGGATTTTCCCGCCCGACACTCCCGCAGCTGATCACAGCCGTGCGGAGT 7529 Query 37037 GATTTATTAACCCGCTTTGAGCAGGAT---ACGCTG------CTTCGTCGTATGGATGCG 37087 || | | |||||| | | | ||| |||||| ||||| || | |||||| Sbjct 7530 GACATTCTTACCCGCCTCGCGGCTGATTCAACGCTGGCTGAACTTCGCCGAACGGATGCA 7589 Query 37088 GAAGTGTACGCCCGTGTACAGGCTGCAGCTGTGCACACGTTGTACGGGTATATCGATTAT 37147 || || ||| ||| || | ||| ||| | || ||||| | || || || |||||||| Sbjct 7590 GAGGTTTACAGCCGCGTGCTGGCAGCATCGGTTCACACCGTCTATGGCTACATCGATTAC 7649 Query 37148 CTTGCCAGAAATCTGTTGCCGGACATGTGTGATGAAGACTGGCTGTACCGGCACGCCAGA 37207 |||||| | ||||| | || || | ||||||||||||||| ||| || | | Sbjct 7650 CTTGCCCGCAATCTTCTTCCTGATCTTGCTGATGAAGACTGGCTTACCCGTCATGGAAAC 7709 Query 37208 ATCAAACGCTGCCCGCGAAAAGATGCGGTGGCAGCCCGGGGATTTGTGCGCTGGGATGGC 37267 || || || ||||| |||| || || || || | ||| || ||||||||| Sbjct 7710 ATGAAGCGGGCACCGCGCAAAGCAGCCACTGCTGCTTCTGGCTATGTCCGATGGGATGGC 7769 Query 37268 GTAGAGGGGACGCCGG---TATTGCCAGCGGGAACGCAGATCCAGCGTGATGATCAGGTG 37324 || ||| || | | ||| | || || | || || ||| | ||||| | ||| Sbjct 7770 GTGACGGGCACCACTGGCATATCGGCA--GGCGTCACAAATTCAGAGAGATGACCTGGTA 7827 Query 37325 ACCTTCACCACGACGGCGACGGTGACCGCAGCCGATGGTCTTCTCCGGGTGCCTGT 37380 | |||||||| ||||| | | || || | | ||| |||| || ||||| || Sbjct 7828 TCTTTCACCACCACGGCCAGCGCCACACCATCAGGAGGTGTTCTGCGCGTGCCCGT 7883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136079727486450