Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq35 129 5e-25
seq1042 107 2e-18
seq757 102 8e-17
seq1089 86.0 6e-12
seq474 86.0 6e-12
>seq35
Length=1961283
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958
|||||| || |||||||| ||||||||||||||||| ||||||||||| |||||| ||
Sbjct 1196823 ATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGGAA 1196764
Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018
||||| ||||||| ||||| | || || || | | |||||||| | | |||
Sbjct 1196763 CCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGATT 1196704
Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078
||||| ||||| ||||| || ||||||||||||| || || ||||||||
Sbjct 1196703 TTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATAAAGTGACG 1196644
Query 12079 TTCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114
|| || | ||| ||||| |||||| || | |||
Sbjct 1196643 CTCATCATCAGTCAATTTCATCCAATCTTCAAGATC 1196608
Score = 120 bits (132), Expect = 3e-22
Identities = 153/210 (73%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725
|| || ||||| ||| ||||| || ||||| ||||||| ||| || | ||||||||
Sbjct 1197118 ATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTCAACCAAAATAAT 1197059
Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785
|||||||| ||||| || ||||| || || || || |||||||| |||| |||||
Sbjct 1197058 GCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCAACTAACCTTTCA 1196999
Query 11786 CCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842
||| | | | || | | |||||||| |||||||| || |||||||||||
Sbjct 1196998 CCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCCTTCTTTTTTACA 1196939
Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAAA 11872
|| ||| ||||| ||||| |||||||||
Sbjct 1196938 CACGGCATGGTTTCAATAGCATTAAATAAA 1196909
>seq1042
Length=111944
Score = 107 bits (118), Expect = 2e-18
Identities = 134/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950
||| | | |||||||||||||||||| ||||||||||||||||| ||||| || || |
Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586
Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCC 12010
||||| || ||||| ||||||| ||||| | || || || | |||||| ||
Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646
Query 12011 GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATA 12070
| | ||| ||| | || || |||| || || |||||||||||||| | ||||
Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATA 80706
Query 12071 AAGT 12074
||||
Sbjct 80707 AAGT 80710
>seq757
Length=226151
Score = 102 bits (112), Expect = 8e-17
Identities = 136/186 (73%), Gaps = 6/186 (3%)
Strand=Plus/Minus
Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229
||||| ||| | |||||||||||||| || |||||||| | | ||||||| ||| ||
Sbjct 204887 ATATAAATTTGTTGTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGA 204828
Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289
||||||||||||||||||| || | |||||| | || ||| || |||| | |
Sbjct 204827 AGCAGTAGGCATTGGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTC 204768
Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTA---ACCACATATCATATTG 37346
||||| | | ||||| ||||||| || | || ||||| |||||| ||||| ||
Sbjct 204767 TTTTAATATTTCCCAATTCCATAAA-CTACTAGG--CTTTACATTCCACATTTCATACTG 204711
Query 37347 TAGAAT 37352
|| |||
Sbjct 204710 TAAAAT 204705
>seq1089
Length=106908
Score = 86.0 bits (94), Expect = 6e-12
Identities = 131/185 (71%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229
||||| ||| | || |||||||| || || || ||||| | | ||||| | || ||
Sbjct 30828 ATATAAATTTGTTGTGTATGGTTCTATAGATTCGTTATTTCCAAGAATTTGTGCCGTTGA 30887
Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289
|| || ||||| ||||||| || | |||||| | ||||||| || |||| | |
Sbjct 30888 AGCCGTGGGCATCGGTGCTAATAACAATGAATTTCTAACTCCATGTTTAGCAATTTTTTC 30947
Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGT 37347
||||| | || ||| |||||||| || || || || | || |||||||||||| ||
Sbjct 30948 TTTTAATATATCCCAGTCCCATAAGTCAGTAGGCTTTACATT--CCACATATCATACTGC 31005
Query 37348 AGAAT 37352
| |||
Sbjct 31006 AAAAT 31010
>seq474
Length=173882
Score = 86.0 bits (94), Expect = 6e-12
Identities = 131/185 (71%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229
||||| ||| | || |||||||| || || || ||||| | | ||||| | || ||
Sbjct 165534 ATATAAATTTGTTGTGTATGGTTCTATAGATTCGTTATTTCCAAGAATTTGTGCCGTTGA 165475
Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289
|| || ||||| ||||||| || | |||||| | ||||||| || |||| | |
Sbjct 165474 AGCCGTGGGCATCGGTGCTAATAACAATGAATTTCTAACTCCATGTTTAGCAATTTTTTC 165415
Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGT 37347
||||| | || ||| |||||||| || || || || | || |||||||||||| ||
Sbjct 165414 TTTTAATATATCCCAGTCCCATAAGTCAGTAGGCTTTACATT--CCACATATCATACTGC 165357
Query 37348 AGAAT 37352
| |||
Sbjct 165356 AAAAT 165352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468384681802000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |