Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq35 129 5e-25 seq1042 107 2e-18 seq757 102 8e-17 seq1089 86.0 6e-12 seq474 86.0 6e-12 >seq35 Length=1961283 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 |||||| || |||||||| ||||||||||||||||| ||||||||||| |||||| || Sbjct 1196823 ATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGGAA 1196764 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||| ||||||| ||||| | || || || | | |||||||| | | ||| Sbjct 1196763 CCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGATT 1196704 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||| ||||| ||||| || ||||||||||||| || || |||||||| Sbjct 1196703 TTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATAAAGTGACG 1196644 Query 12079 TTCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 || || | ||| ||||| |||||| || | ||| Sbjct 1196643 CTCATCATCAGTCAATTTCATCCAATCTTCAAGATC 1196608 Score = 120 bits (132), Expect = 3e-22 Identities = 153/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || || ||||| ||| ||||| || ||||| ||||||| ||| || | |||||||| Sbjct 1197118 ATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTCAACCAAAATAAT 1197059 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 |||||||| ||||| || ||||| || || || || |||||||| |||| ||||| Sbjct 1197058 GCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCAACTAACCTTTCA 1196999 Query 11786 CCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| | | | || | | |||||||| |||||||| || ||||||||||| Sbjct 1196998 CCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCCTTCTTTTTTACA 1196939 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAAA 11872 || ||| ||||| ||||| ||||||||| Sbjct 1196938 CACGGCATGGTTTCAATAGCATTAAATAAA 1196909 >seq1042 Length=111944 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||| | | |||||||||||||||||| ||||||||||||||||| ||||| || || | Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCC 12010 ||||| || ||||| ||||||| ||||| | || || || | |||||| || Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 12011 GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATA 12070 | | ||| ||| | || || |||| || || |||||||||||||| | |||| Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATA 80706 Query 12071 AAGT 12074 |||| Sbjct 80707 AAGT 80710 >seq757 Length=226151 Score = 102 bits (112), Expect = 8e-17 Identities = 136/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||||| ||| | |||||||||||||| || |||||||| | | ||||||| ||| || Sbjct 204887 ATATAAATTTGTTGTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGA 204828 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 ||||||||||||||||||| || | |||||| | || ||| || |||| | | Sbjct 204827 AGCAGTAGGCATTGGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTC 204768 Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTA---ACCACATATCATATTG 37346 ||||| | | ||||| ||||||| || | || ||||| |||||| ||||| || Sbjct 204767 TTTTAATATTTCCCAATTCCATAAA-CTACTAGG--CTTTACATTCCACATTTCATACTG 204711 Query 37347 TAGAAT 37352 || ||| Sbjct 204710 TAAAAT 204705 >seq1089 Length=106908 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||||| ||| | || |||||||| || || || ||||| | | ||||| | || || Sbjct 30828 ATATAAATTTGTTGTGTATGGTTCTATAGATTCGTTATTTCCAAGAATTTGTGCCGTTGA 30887 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 || || ||||| ||||||| || | |||||| | ||||||| || |||| | | Sbjct 30888 AGCCGTGGGCATCGGTGCTAATAACAATGAATTTCTAACTCCATGTTTAGCAATTTTTTC 30947 Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGT 37347 ||||| | || ||| |||||||| || || || || | || |||||||||||| || Sbjct 30948 TTTTAATATATCCCAGTCCCATAAGTCAGTAGGCTTTACATT--CCACATATCATACTGC 31005 Query 37348 AGAAT 37352 | ||| Sbjct 31006 AAAAT 31010 >seq474 Length=173882 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||||| ||| | || |||||||| || || || ||||| | | ||||| | || || Sbjct 165534 ATATAAATTTGTTGTGTATGGTTCTATAGATTCGTTATTTCCAAGAATTTGTGCCGTTGA 165475 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 || || ||||| ||||||| || | |||||| | ||||||| || |||| | | Sbjct 165474 AGCCGTGGGCATCGGTGCTAATAACAATGAATTTCTAACTCCATGTTTAGCAATTTTTTC 165415 Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGT 37347 ||||| | || ||| |||||||| || || || || | || |||||||||||| || Sbjct 165414 TTTTAATATATCCCAGTCCCATAAGTCAGTAGGCTTTACATT--CCACATATCATACTGC 165357 Query 37348 AGAAT 37352 | ||| Sbjct 165356 AAAAT 165352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468384681802000