Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq35 116 5e-21
seq1042 100 4e-16
seq1089 98.7 1e-15
seq474 98.7 1e-15
seq757 96.9 5e-15
seq7356 87.8 2e-12
seq989 84.2 3e-11
>seq35
Length=1961283
Score = 116 bits (128), Expect = 5e-21
Identities = 163/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||| | || ||| ||| || | || ||||||| || | || |
Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| | |||||||| | ||||| |||||| || || || ||||| ||||| ||||| |
Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013
Query 36300 CAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGTATCCACTTTTGAGCCCAATCGG 36356
||| | || || ||| || || ||| ||| ||||| || |||||||||| |
Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953
Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 36404
|||||||||||||||| ||||| || || ||||||||||| | | |||
Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905
Score = 113 bits (124), Expect = 6e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478
|||| || |||||| ||||| || | ||||||||||| ||||| || ||||| ||
Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772
Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538
||||| || || || |||||||||||||| || | || |||||| | | |||| |||
Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712
Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 36598
| | ||||||||| || || || || || |||||||| || ||||| || ||||
Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652
Query 36599 AA 36600
||
Sbjct 1196651 AA 1196650
>seq1042
Length=111944
Score = 100 bits (110), Expect = 4e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478
||||||| ||||||||| || || | ||||||||||| ||||| || || || ||
Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586
Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538
||||| || || || |||||||||||||| || | || |||||| | |||||||||
Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646
Query 36539 GCTAAATTTTCATTCACTATTCC 36561
| | ||||||| | ||||| ||
Sbjct 80647 ACAAGATTTTCACTAACTATGCC 80669
>seq1089
Length=106908
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840
||||| || || ||||| ||||||||||||||||| || || || | ||||| |||||||
Sbjct 31595 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 31654
Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899
|| || || || ||||| ||||| || | |||| ||||||||||||| |||||
Sbjct 31655 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 31713
>seq474
Length=173882
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840
||||| || || ||||| ||||||||||||||||| || || || | ||||| |||||||
Sbjct 164767 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 164708
Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899
|| || || || ||||| ||||| || | |||| ||||||||||||| |||||
Sbjct 164707 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 164649
>seq757
Length=226151
Score = 96.9 bits (106), Expect = 5e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285
||||| ||||| | ||| |||||||| || | ||||||||| ||||| ||||| |||||
Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815
Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 65345
||||| | || || |||||||| ||||| | | ||||| ||||||| ||||
Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 204755
Query 65346 CAATTCCA 65353
||||||||
Sbjct 204754 CAATTCCA 204747
Score = 84.2 bits (92), Expect = 3e-11
Identities = 122/172 (71%), Gaps = 8/172 (5%)
Strand=Plus/Plus
Query 65420 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 65479
|||||| | ||| ||||| | || ||||||||||||||| || ||||| ||||| ||
Sbjct 190799 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 190858
Query 65480 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 65539
|||||| |||||| || | | || |||| ||||| ||||||| |||||
Sbjct 190859 ATAAATAGTTTCGTGAATTTGTATGTTAAGATACCTAGCTTCTTTATTATCAAAAGGATA 190918
Query 65540 ----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 65587
|||| | |||||| |||||||||||||| | |||||| || ||
Sbjct 190919 TCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 190966
>seq7356
Length=7625
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/172 (72%), Gaps = 8/172 (5%)
Strand=Plus/Minus
Query 65420 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 65479
|||||| | ||| ||||| | || ||||||||||||||| || ||||| ||||| ||
Sbjct 4489 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 4430
Query 65480 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 65539
|||||| |||||| || | | || |||| | ||||| ||||||| |||||
Sbjct 4429 ATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGATA 4370
Query 65540 ----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 65587
|||| | |||||| |||||||||||||| | |||||| || ||
Sbjct 4369 TCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 4322
>seq989
Length=145162
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506
||||||||||||||| || ||||| ||||| |||||||| | |||| || | | ||
Sbjct 126942 AGCTAGTTCACAACTTGCTTCTAAAGCACCATAATAAATAGATTCGTGAATTTGTGTGTT 126883
Query 65507 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 65566
||| || ||||| ||||||| ||||| || | |||||| ||||||||
Sbjct 126882 AAGAACTCTAGCTTCTTTATTATCAAAAGGATATTTCATTTTAATAAATAAATCTGCTAA 126823
Query 65567 TCCTTGAACACCAATACCGAT 65587
|||||| |||||||| || ||
Sbjct 126822 TCCTTGGACACCAATTCCAAT 126802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657975965197000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |