Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq35 122 1e-22
seq1042 96.9 5e-15
seq1089 93.3 6e-14
seq474 93.3 6e-14
seq757 91.5 2e-13
seq7356 84.2 3e-11
>seq35
Length=1961283
Score = 122 bits (134), Expect = 1e-22
Identities = 164/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||| || || ||| ||| || | || ||||||| || | || |
Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| | |||||||| | ||||| ||||| || || || ||||| ||||| ||||| |
Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013
Query 50102 CAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGG 50158
|||| | || || ||| || | || || ||| ||||| || |||||||||| |
Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953
Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206
|||||||||||||||| ||||| ||||| || |||||||| | | |||
Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905
Score = 104 bits (114), Expect = 3e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280
|||| || ||| || || || || | ||||||||||| ||||| || ||||| ||
Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772
Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340
|| || || || || |||||||||||||| || | || |||||| | | |||| ||||
Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712
Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400
| | ||||||||| || || || || || |||||||| || ||||| || ||||
Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652
Query 50401 AAATG 50405
|| ||
Sbjct 1196651 AAGTG 1196647
>seq1042
Length=111944
Score = 96.9 bits (106), Expect = 5e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280
||||||| ||| ||||| || || | ||||||||||| ||||| || || || ||
Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586
Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340
|| || || || || |||||||||||||| || | || |||||| | ||||||||| |
Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646
Query 50341 GCTAAATTTTCATTCACTATTCC 50363
| | ||||||| | ||||| ||
Sbjct 80647 ACAAGATTTTCACTAACTATGCC 80669
>seq1089
Length=106908
Score = 93.3 bits (102), Expect = 6e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719
||||| || |||||||| || || |||||||||||||| || || | ||||| |||||||
Sbjct 31595 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 31654
Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778
|| || || || ||||| ||||| || | | || ||||||||||||| |||||
Sbjct 31655 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 31713
>seq474
Length=173882
Score = 93.3 bits (102), Expect = 6e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719
||||| || |||||||| || || |||||||||||||| || || | ||||| |||||||
Sbjct 164767 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 164708
Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778
|| || || || ||||| ||||| || | | || ||||||||||||| |||||
Sbjct 164707 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 164649
>seq757
Length=226151
Score = 91.5 bits (100), Expect = 2e-13
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164
||||||||||| | ||||||||||| || | ||||||||| ||||| || || |||||
Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815
Query 79165 GGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCC 79224
||||| | || || |||||||| ||||| | ||||| ||||||| ||||
Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 204755
Query 79225 CAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274
|||| ||| | | | || |||||||| | ||||| |||| |||
Sbjct 204754 CAATTCCATAAACTACTAGGCTTTACATTCCACATTTCATACTGTAAAAT 204705
Score = 86.0 bits (94), Expect = 9e-12
Identities = 171/248 (69%), Gaps = 13/248 (5%)
Strand=Plus/Minus
Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349
||||||| || | | ||| | ||| | ||||| |||||||||||||| || |||||
Sbjct 204623 TGATCCTTGATAAGATGAATAGGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 204564
Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-T 79408
|| || ||||| | || || || || | |||| || | | || ||| ||| |
Sbjct 204563 CGCACCATAATACAAAGTCTCAAATATTTGTATATTAAGCTTTCTTGATTC-AGGAGAGC 204505
Query 79409 CAAATGGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 79464
|||| ||| | || | ||||||||| ||||| || ||||| | |||||| ||
Sbjct 204504 CAAACGGAAATCGCATCAATGAGAATAAA----TCTGCCAACCCTTGGATACCAATCCCA 204449
Query 79465 ATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT--AATAATTAATAT 79522
||||| | ||||| ||||| || ||||||| | || ||| || ||||| || |||
Sbjct 204448 ATAGGACGATGTCGTTTATTTGACGTTTCAGCCTGTGATATACAATGGAATAAATATTAT 204389
Query 79523 CT-ATAAT 79529
| |||||
Sbjct 204388 ATAATAAT 204381
>seq7356
Length=7625
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/173 (72%), Gaps = 12/173 (7%)
Strand=Plus/Minus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCG--GCTAATTCACAACTCGCCTCTAATGCTCCGT 79357
||||||| || ||||| | |||| | |||| ||||||||| || ||||| || || |
Sbjct 4488 TATGTTTTGTACGGTCCAT--TTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCAT 4431
Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417
||||||| |||||| ||| | | || |||| | |||||| ||||||| ||||
Sbjct 4430 AATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGAT 4371
Query 79418 A----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466
| |||| | |||||| |||||||||||||| | |||||| || ||
Sbjct 4370 ATCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 4322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718053992737000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |