Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq35 122 1e-22 seq1042 96.9 5e-15 seq1089 93.3 6e-14 seq474 93.3 6e-14 seq757 91.5 2e-13 seq7356 84.2 3e-11 >seq35 Length=1961283 Score = 122 bits (134), Expect = 1e-22 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||| || || ||| ||| || | || ||||||| || | || | Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | |||||||| | ||||| ||||| || || || ||||| ||||| ||||| | Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013 Query 50102 CAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 |||| | || || ||| || | || || ||| ||||| || |||||||||| | Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 |||||||||||||||| ||||| ||||| || |||||||| | | ||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 |||| || ||| || || || || | ||||||||||| ||||| || ||||| || Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 || || || || || |||||||||||||| || | || |||||| | | |||| |||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400 | | ||||||||| || || || || || |||||||| || ||||| || |||| Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652 Query 50401 AAATG 50405 || || Sbjct 1196651 AAGTG 1196647 >seq1042 Length=111944 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||||| ||| ||||| || || | ||||||||||| ||||| || || || || Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 || || || || || |||||||||||||| || | || |||||| | ||||||||| | Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 50341 GCTAAATTTTCATTCACTATTCC 50363 | | ||||||| | ||||| || Sbjct 80647 ACAAGATTTTCACTAACTATGCC 80669 >seq1089 Length=106908 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 ||||| || |||||||| || || |||||||||||||| || || | ||||| ||||||| Sbjct 31595 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 31654 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 || || || || ||||| ||||| || | | || ||||||||||||| ||||| Sbjct 31655 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 31713 >seq474 Length=173882 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 ||||| || |||||||| || || |||||||||||||| || || | ||||| ||||||| Sbjct 164767 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 164708 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 || || || || ||||| ||||| || | | || ||||||||||||| ||||| Sbjct 164707 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 164649 >seq757 Length=226151 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164 ||||||||||| | ||||||||||| || | ||||||||| ||||| || || ||||| Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815 Query 79165 GGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCC 79224 ||||| | || || |||||||| ||||| | ||||| ||||||| |||| Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTAATATTTCC 204755 Query 79225 CAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 |||| ||| | | | || |||||||| | ||||| |||| ||| Sbjct 204754 CAATTCCATAAACTACTAGGCTTTACATTCCACATTTCATACTGTAAAAT 204705 Score = 86.0 bits (94), Expect = 9e-12 Identities = 171/248 (69%), Gaps = 13/248 (5%) Strand=Plus/Minus Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349 ||||||| || | | ||| | ||| | ||||| |||||||||||||| || ||||| Sbjct 204623 TGATCCTTGATAAGATGAATAGGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 204564 Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-T 79408 || || ||||| | || || || || | |||| || | | || ||| ||| | Sbjct 204563 CGCACCATAATACAAAGTCTCAAATATTTGTATATTAAGCTTTCTTGATTC-AGGAGAGC 204505 Query 79409 CAAATGGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 79464 |||| ||| | || | ||||||||| ||||| || ||||| | |||||| || Sbjct 204504 CAAACGGAAATCGCATCAATGAGAATAAA----TCTGCCAACCCTTGGATACCAATCCCA 204449 Query 79465 ATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT--AATAATTAATAT 79522 ||||| | ||||| ||||| || ||||||| | || ||| || ||||| || ||| Sbjct 204448 ATAGGACGATGTCGTTTATTTGACGTTTCAGCCTGTGATATACAATGGAATAAATATTAT 204389 Query 79523 CT-ATAAT 79529 | ||||| Sbjct 204388 ATAATAAT 204381 >seq7356 Length=7625 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 12/173 (7%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCG--GCTAATTCACAACTCGCCTCTAATGCTCCGT 79357 ||||||| || ||||| | |||| | |||| ||||||||| || ||||| || || | Sbjct 4488 TATGTTTTGTACGGTCCAT--TTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCAT 4431 Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417 ||||||| |||||| ||| | | || |||| | |||||| ||||||| |||| Sbjct 4430 AATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGAT 4371 Query 79418 A----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 | |||| | |||||| |||||||||||||| | |||||| || || Sbjct 4370 ATCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 4322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718053992737000