Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq35 154 1e-32
seq1042 114 1e-20
>seq35
Length=1961283
Score = 154 bits (170), Expect = 1e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||| || || || ||| ||||| |||||||| ||||||| ||| |
Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| |||||||||| ||||||||| || || || ||||| || |||||||||||||| |
Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013
Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073
| | ||| | ||| ||||| | |||||| | | |||||||| |||||| || |
Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953
Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123
|| ||||| | | | ||| ||||||||||||||||||||| | |||
Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGTCC 1196903
Score = 131 bits (144), Expect = 2e-25
Identities = 161/216 (75%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 14136 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCT 14195
|||||| | ||||| ||||| | ||||||||||||||| || ||||| |||||||| |
Sbjct 1196830 CTTGAA-TATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772
Query 14196 ATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTC 14254
|| || || |||||||| |||||||| || | ||| ||||| ||| | ||||||||
Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AGAATCTTTC 1196713
Query 14255 GGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT 14314
| | ||||||||| || || ||||| ||| ||||||||||| |||| || ||
Sbjct 1196712 AACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATAT 1196653
Query 14315 AAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350
||||| |||| |||| | | ||| |||||||
Sbjct 1196652 AAAGTGACGCTCATCATCAGTCAATTTCATCCAATC 1196617
>seq1042
Length=111944
Score = 114 bits (126), Expect = 1e-20
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200
||| |||||||| || | ||||||||||||||| || ||||| || || || ||| ||
Sbjct 80532 AATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATTATTTG 80591
Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCA 14259
|| |||||||| |||||||| || | ||| ||||| ||| |||||| || | |
Sbjct 80592 GAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AAAATCGTTTAACAA 80650
Query 14260 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14319
||||||| ||||||| |||| ||| || |||||||| | ||||| |||||||
Sbjct 80651 GATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATAAAGT 80710
Query 14320 ATTGCTCTTCAT 14331
|||||||||
Sbjct 80711 GACGCTCTTCAT 80722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479584531345000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |