Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq35 154 1e-32 seq1042 114 1e-20 >seq35 Length=1961283 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||| || || || ||| ||||| |||||||| ||||||| ||| | Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | |||||||||| ||||||||| || || || ||||| || |||||||||||||| | Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | ||| | ||| ||||| | |||||| | | |||||||| |||||| || | Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 || ||||| | | | ||| ||||||||||||||||||||| | ||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGTCC 1196903 Score = 131 bits (144), Expect = 2e-25 Identities = 161/216 (75%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 14136 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCT 14195 |||||| | ||||| ||||| | ||||||||||||||| || ||||| |||||||| | Sbjct 1196830 CTTGAA-TATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 14196 ATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTC 14254 || || || |||||||| |||||||| || | ||| ||||| ||| | |||||||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AGAATCTTTC 1196713 Query 14255 GGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT 14314 | | ||||||||| || || ||||| ||| ||||||||||| |||| || || Sbjct 1196712 AACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATAT 1196653 Query 14315 AAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 ||||| |||| |||| | | ||| ||||||| Sbjct 1196652 AAAGTGACGCTCATCATCAGTCAATTTCATCCAATC 1196617 >seq1042 Length=111944 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||| |||||||| || | ||||||||||||||| || ||||| || || || ||| || Sbjct 80532 AATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATTATTTG 80591 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCA 14259 || |||||||| |||||||| || | ||| ||||| ||| |||||| || | | Sbjct 80592 GAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AAAATCGTTTAACAA 80650 Query 14260 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14319 ||||||| ||||||| |||| ||| || |||||||| | ||||| ||||||| Sbjct 80651 GATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATAAAGT 80710 Query 14320 ATTGCTCTTCAT 14331 ||||||||| Sbjct 80711 GACGCTCTTCAT 80722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479584531345000