Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq35 134 1e-26 seq1042 113 4e-20 >seq35 Length=1961283 Score = 134 bits (148), Expect = 1e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||| || || || ||| ||||| |||||||| ||||||| ||| | Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | |||||||||| |||||| || ||| || || ||||| || |||||||||||||| | Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | | || | ||| ||||| | |||||| | | |||||||| |||||| || | Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || ||||| | | | ||| ||||| || ||||| |||||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 1196909 Score = 129 bits (142), Expect = 6e-25 Identities = 167/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 13924 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCT 13983 |||||| | ||||| ||||| | ||||||||||||||| || ||||| ||||| || | Sbjct 1196830 CTTGAA-TATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 13984 ATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAAATCTTTC 14042 || || || ||||||||||||||||| || | ||| || || ||| | |||||||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AGAATCTTTC 1196713 Query 14043 TGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT 14102 | | |||||||| ||||| ||||| ||| ||||||||||| |||| || || Sbjct 1196712 AACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATAT 1196653 Query 14103 AAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 ||||| |||| |||| | | ||| ||||||| | | ||||| Sbjct 1196652 AAAGTGACGCTCATCATCAGTCAATTTCATCCAATCTTCAAGATCCT 1196606 >seq1042 Length=111944 Score = 113 bits (124), Expect = 4e-20 Identities = 144/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||| |||||||| || | ||||||||||||||| || ||||| || ||||| ||| || Sbjct 80532 AATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATTATTTG 80591 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCA 14047 || ||||||||||||||||| || | ||| || || ||| |||||| || | || Sbjct 80592 GAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAG-AAAATCGTT-TAACA 80649 Query 14048 AG-TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14106 || |||||| |||| || |||| ||| || |||||||| | ||||| |||||| Sbjct 80650 AGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATAAAG 80709 Query 14107 TATTGCTCTTCAT 14119 | ||||||||| Sbjct 80710 TGACGCTCTTCAT 80722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478445672037000