Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq231 109 4e-19 seq276 95.1 9e-15 >seq231 Length=580210 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42920 CCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAA 42979 ||||||| | || ||||| |||||||||||| | || || | || |||||||| || | Sbjct 340829 CCTTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 340888 Query 42980 TCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGC 43039 |||| || |||||||||| || | ||||||||| || ||| ||||||| | Sbjct 340889 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTT 340948 Query 43040 CAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAA 43099 | | ||||| || |||||| || | || || || || || || || |||||||| | Sbjct 340949 CGATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGA 341008 Query 43100 AAATTTGCATTTT 43112 |||||||||| || Sbjct 341009 AAATTTGCATGTT 341021 >seq276 Length=376631 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | ||| || ||||| || ||||| | || |||||||| || ||||||||| Sbjct 241614 TCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241555 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || |||||||||||||| | || | |||||||| || || |||| || | Sbjct 241554 ATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 241495 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| | ||| || || || || | || || ||||| || || || ||||||||| Sbjct 241494 TCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 241435 Query 43099 AAAATTTGCATT 43110 || ||||||||| Sbjct 241434 AAGATTTGCATT 241423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381258397987650