Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq35 122 1e-22 seq1089 102 1e-16 seq474 102 1e-16 seq1042 100 4e-16 seq862 93.3 6e-14 seq7356 89.7 7e-13 seq757 84.2 3e-11 >seq35 Length=1961283 Score = 122 bits (134), Expect = 1e-22 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||| | || ||| ||| || | || ||||||| || | || | Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||||| | ||||| |||||| || || || ||||| ||||| ||||| | Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013 Query 42207 CAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 ||| | || || ||| || || ||| ||| ||||| || |||||||||| | Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311 |||||||||||||||| ||||| ||||| || |||||||| | | ||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 |||| || |||||| || || || | ||||||||||||||||| || ||||| || Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 || || || || || |||||||| ||||| || || || |||||| | | |||| |||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505 | | |||||| || || || || || || |||||||| || ||||| || |||| Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652 Query 42506 AA 42507 || Sbjct 1196651 AA 1196650 >seq1089 Length=106908 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 ||||| || |||||||| ||||||||||||||||| || || || | ||||| ||||||| Sbjct 31595 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 31654 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 || || || || ||||| ||||| || | | | || ||||||||||||| ||||| Sbjct 31655 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 31713 >seq474 Length=173882 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 ||||| || |||||||| ||||||||||||||||| || || || | ||||| ||||||| Sbjct 164767 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 164708 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 || || || || ||||| ||||| || | | | || ||||||||||||| ||||| Sbjct 164707 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 164649 >seq1042 Length=111944 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||||| ||||||||| || || | ||||||||||||||||| || || || || Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 || || || || || |||||||| ||||| || || || |||||| | ||||||||| | Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 42446 GCTAAATTTTCGTTCACTATTCC 42468 | | |||||| | ||||| || Sbjct 80647 ACAAGATTTTCACTAACTATGCC 80669 >seq862 Length=143805 Score = 93.3 bits (102), Expect = 6e-14 Identities = 134/187 (72%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 71397 TCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAA 71456 ||| | |||||| |||| |||||||| || ||||| ||||||||||| | || || || Sbjct 76171 TCCATATTTTTCAGCTAACTCACAACTAGCTTCTAACGCTCCATAATACAAAGTCTCAAA 76112 Query 71457 AATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT---TTAA-GAGAA 71512 || | |||| || | | || || ||| ||||||| || | |||| | ||| Sbjct 76111 TATTTGTATATTAAGGTTTCTTGATTTAGGGGACCCAAATGGGTATTGCATTAATGCGAA 76052 Query 71513 TAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAA 71572 |||| ||||| | |||||||||||||| || ||||||| ||| | ||||| ||| Sbjct 76051 TAAA----TCTGCCAGCCCTTGAACGCCAATCCCAATAGGTCGATGTTTTTTATTTGAAG 75996 Query 71573 TTTCAGC 71579 ||| ||| Sbjct 75995 TTTTAGC 75989 >seq7356 Length=7625 Score = 89.7 bits (98), Expect = 7e-13 Identities = 125/175 (71%), Gaps = 8/175 (5%) Strand=Plus/Minus Query 71379 TGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCC 71438 || |||||| | ||| ||||| | ||| |||||||||||||| || ||||| || || Sbjct 4492 TGGATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACC 4433 Query 71439 ATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG 71498 ||||||||| |||||| ||| | | || |||| | ||||| ||||||| || Sbjct 4432 ATAATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGG 4373 Query 71499 ATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGAT 71549 ||| |||| | |||||| |||||||||||||| | ||||| || || Sbjct 4372 ATATCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 4322 >seq757 Length=226151 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/175 (71%), Gaps = 8/175 (5%) Strand=Plus/Plus Query 71379 TGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCC 71438 || |||||| | ||| ||||| | ||| |||||||||||||| || ||||| || || Sbjct 190796 TGGATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACC 190855 Query 71439 ATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG 71498 ||||||||| |||||| ||| | | || |||| ||||| ||||||| || Sbjct 190856 ATAATAAATAGTTTCGTGAATTTGTATGTTAAGATACCTAGCTTCTTTATTATCAAAAGG 190915 Query 71499 ATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGAT 71549 ||| |||| | |||||| |||||||||||||| | ||||| || || Sbjct 190916 ATATCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 190966 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || || || | |||||| |||||||| ||||| || || || || | ||||| ||||| Sbjct 204098 TACTGAATGACTTCAGTACAAAGATTGCTACATTTAATTGTACCAAGATTTTTCTGATTG 204039 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 || || ||||| ||||| ||||| | ||| |||| ||||||||||||| ||||| Sbjct 204038 CTTTTGGCATTACATGCATCTTTATACAACATATACGGCATACCAGTTTCAATTTGAGA 203980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670938487433000