Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq35 122 1e-22
seq1089 102 1e-16
seq474 102 1e-16
seq1042 100 4e-16
seq862 93.3 6e-14
seq7356 89.7 7e-13
seq757 84.2 3e-11
>seq35
Length=1961283
Score = 122 bits (134), Expect = 1e-22
Identities = 164/228 (72%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||| | || ||| ||| || | || ||||||| || | || |
Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| | |||||||| | ||||| |||||| || || || ||||| ||||| ||||| |
Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013
Query 42207 CAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263
||| | || || ||| || || ||| ||| ||||| || |||||||||| |
Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953
Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311
|||||||||||||||| ||||| ||||| || |||||||| | | |||
Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905
Score = 107 bits (118), Expect = 3e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385
|||| || |||||| || || || | ||||||||||||||||| || ||||| ||
Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772
Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445
|| || || || || |||||||| ||||| || || || |||||| | | |||| ||||
Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712
Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 42505
| | |||||| || || || || || || |||||||| || ||||| || ||||
Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652
Query 42506 AA 42507
||
Sbjct 1196651 AA 1196650
>seq1089
Length=106908
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802
||||| || |||||||| ||||||||||||||||| || || || | ||||| |||||||
Sbjct 31595 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 31654
Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861
|| || || || ||||| ||||| || | | | || ||||||||||||| |||||
Sbjct 31655 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 31713
>seq474
Length=173882
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802
||||| || |||||||| ||||||||||||||||| || || || | ||||| |||||||
Sbjct 164767 TATTGAATGATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTA 164708
Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861
|| || || || ||||| ||||| || | | | || ||||||||||||| |||||
Sbjct 164707 CTTTTAGAATTGCAAGCATCTTTATACAGTACATATGGCATACCAGTTTCAATTTGAGA 164649
>seq1042
Length=111944
Score = 100 bits (110), Expect = 4e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385
||||||| ||||||||| || || | ||||||||||||||||| || || || ||
Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586
Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445
|| || || || || |||||||| ||||| || || || |||||| | ||||||||| |
Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646
Query 42446 GCTAAATTTTCGTTCACTATTCC 42468
| | |||||| | ||||| ||
Sbjct 80647 ACAAGATTTTCACTAACTATGCC 80669
>seq862
Length=143805
Score = 93.3 bits (102), Expect = 6e-14
Identities = 134/187 (72%), Gaps = 8/187 (4%)
Strand=Plus/Minus
Query 71397 TCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAA 71456
||| | |||||| |||| |||||||| || ||||| ||||||||||| | || || ||
Sbjct 76171 TCCATATTTTTCAGCTAACTCACAACTAGCTTCTAACGCTCCATAATACAAAGTCTCAAA 76112
Query 71457 AATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT---TTAA-GAGAA 71512
|| | |||| || | | || || ||| ||||||| || | |||| | |||
Sbjct 76111 TATTTGTATATTAAGGTTTCTTGATTTAGGGGACCCAAATGGGTATTGCATTAATGCGAA 76052
Query 71513 TAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAA 71572
|||| ||||| | |||||||||||||| || ||||||| ||| | ||||| |||
Sbjct 76051 TAAA----TCTGCCAGCCCTTGAACGCCAATCCCAATAGGTCGATGTTTTTTATTTGAAG 75996
Query 71573 TTTCAGC 71579
||| |||
Sbjct 75995 TTTTAGC 75989
>seq7356
Length=7625
Score = 89.7 bits (98), Expect = 7e-13
Identities = 125/175 (71%), Gaps = 8/175 (5%)
Strand=Plus/Minus
Query 71379 TGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCC 71438
|| |||||| | ||| ||||| | ||| |||||||||||||| || ||||| || ||
Sbjct 4492 TGGATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACC 4433
Query 71439 ATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG 71498
||||||||| |||||| ||| | | || |||| | ||||| ||||||| ||
Sbjct 4432 ATAATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGG 4373
Query 71499 ATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGAT 71549
||| |||| | |||||| |||||||||||||| | ||||| || ||
Sbjct 4372 ATATCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 4322
>seq757
Length=226151
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/175 (71%), Gaps = 8/175 (5%)
Strand=Plus/Plus
Query 71379 TGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCC 71438
|| |||||| | ||| ||||| | ||| |||||||||||||| || ||||| || ||
Sbjct 190796 TGGATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACC 190855
Query 71439 ATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG 71498
||||||||| |||||| ||| | | || |||| ||||| ||||||| ||
Sbjct 190856 ATAATAAATAGTTTCGTGAATTTGTATGTTAAGATACCTAGCTTCTTTATTATCAAAAGG 190915
Query 71499 ATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGAT 71549
||| |||| | |||||| |||||||||||||| | ||||| || ||
Sbjct 190916 ATATCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 190966
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802
|| || || | |||||| |||||||| ||||| || || || || | ||||| |||||
Sbjct 204098 TACTGAATGACTTCAGTACAAAGATTGCTACATTTAATTGTACCAAGATTTTTCTGATTG 204039
Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861
|| || ||||| ||||| ||||| | ||| |||| ||||||||||||| |||||
Sbjct 204038 CTTTTGGCATTACATGCATCTTTATACAACATATACGGCATACCAGTTTCAATTTGAGA 203980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670938487433000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |