Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2302 107 2e-18 seq276 86.0 6e-12 >seq2302 Length=121279 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| ||||| |||| ||||||||||| || |||||||| || Sbjct 54332 CCACCACGGAGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAA 54391 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| ||||| || || ||| |||||| |||||| || || || || Sbjct 54392 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGA 54451 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || ||||| | ||| | | || | | || ||| Sbjct 54452 ATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACT 54511 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || ||||| ||||| || || || ||||| Sbjct 54512 TCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 54558 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || || |||| ||||||||||||||| |||||||| ||| Sbjct 54104 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 54163 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || || ||| |||||| |||||| || || || || Sbjct 54164 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 54223 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || ||||| | ||| | | || | | ||| || Sbjct 54224 ATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACC 54283 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | || ||||| || ||||||||| Sbjct 54284 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCATA 54331 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| |||||||||||||| ||||| || ||| Sbjct 52508 CCGCCACGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAA 52567 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||| || || ||| |||||||||||||||| || || || Sbjct 52568 AGGGTACGTCCA-TCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGG 52626 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | ||| | | || | | |||||| Sbjct 52627 GATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGAATCAGAAGATTCTAC 52686 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | ||||| || || | || |||||||| ||||||||| Sbjct 52687 TTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 52735 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || || |||| ||||||||||||||| |||||||| ||| Sbjct 52964 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53023 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || |||||| |||||| ||||||||| || || || Sbjct 53024 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53083 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 53084 ATACCTTCCTTGTC 53097 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || || |||| ||||||||||||||| |||||||| ||| Sbjct 53876 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53935 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || |||||| |||||| |||||| ||||| || || Sbjct 53936 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 53995 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 53996 ATACCTTCCTTGTC 54009 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || || |||| ||||||||||||||| |||||||| ||| Sbjct 53648 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53707 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || || ||| |||||| ||||||||| || || || Sbjct 53708 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53767 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | ||| | | || | | ||| ||| Sbjct 53768 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53827 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | || || ||||| ||||||||| Sbjct 53828 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53875 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || || |||| ||||||||||||||| |||||||| ||| Sbjct 53192 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53251 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || || ||| |||||| ||||||||| || || || Sbjct 53252 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53311 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 53312 ATACCTTCCTTGTC 53325 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || || |||| ||||||||||||||| |||||||| ||| Sbjct 53420 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53479 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || || ||| |||||| |||||| || || || || Sbjct 53480 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 53539 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | ||| | | || | | ||| ||| Sbjct 53540 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53599 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | || || ||||| ||||||||| Sbjct 53600 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53647 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| || || |||| |||||||||||||| ||||| || || Sbjct 52736 CCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAA 52795 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| ||||| || || ||| |||||| |||||| || || || || Sbjct 52796 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 52855 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 52856 ATACCTTCCTTGTC 52869 >seq276 Length=376631 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | ||||| |||| ||| |||||||| || || || || ||| Sbjct 240966 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 240907 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||| || || ||| | || | || || ||||| || || Sbjct 240906 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 240847 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | ||| | | ||| | | ||||||| Sbjct 240846 ATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACT 240787 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || ||||| || | ||||| || || |||||||| Sbjct 240786 TCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | ||||| |||| ||| |||||||| || || || || ||| Sbjct 241422 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 241363 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||| || || ||| | || | || || ||||| || || Sbjct 241362 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241303 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | ||| | | ||| | | ||||||| Sbjct 241302 ATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACT 241243 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || ||||| || | ||||| || || |||||||| Sbjct 241242 TCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | ||||| |||| ||| |||||||| || || || || ||| Sbjct 241650 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 241591 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||| || || ||| | || | || || ||||| || || Sbjct 241590 AAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241531 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | ||| | | ||| | | ||||||| Sbjct 241530 ATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACT 241471 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || ||||| || | ||||| || || |||||||| Sbjct 241470 TCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506862771006000