Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq430 105 1e-17
seq35 89.7 8e-13
>seq430
Length=650307
Score = 105 bits (116), Expect = 1e-17
Identities = 233/344 (68%), Gaps = 4/344 (1%)
Strand=Plus/Minus
Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC-TGCGAG 70132
|||| || || || ||||| || ||| | || | || | |||||||||| ||| |
Sbjct 88317 TGGGACCTGTTTATGGATTTCAATGGCGACATTATGGTGCTGAGTATGTAGATGTGC-AT 88259
Query 70133 ACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACC 70192
|| || || || || | || |||||||| | || | |||| | || |||| ||
Sbjct 88258 ACTGATTACTCTGGAAAAGGCATTGATCAACTTCAAAACGTCATCAATACAATCAAAACT 88199
Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252
|| || |||||| | || | ||| | |||||||||| ||| | | |||||
Sbjct 88198 AACCCTGACGATAGGCGAATGCTTATGATCGCATGGAATCCATGTGATGTACCTAAAATG 88139
Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC-TCGTACGATGGCAAATTGTCATG 70311
|| ||||||||||||| ||| ||| ||||||| ||| ||||||| | |||| ||
Sbjct 88138 GCCTTACCACCGTGTCATTGTCTGGTACAGTTTTTTGTCGC-CGATGGCTATCTGTCGTG 88080
Query 70312 CTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTA 70371
|||||| || | || |||||||| || || ||||||||||| ||||| || ||
Sbjct 88079 TCAAATGTACCAACGATCAGCAGACATGGGTCTAGGAGTACCCTTTAATATTGCCAGTTA 88020
Query 70372 TTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAG 70415
||| | | || | ||||| || || |||| || | ||||
Sbjct 88019 TTCATTACTTACATATATGATAGCCCATGTTACTGGATTAAAAG 87976
>seq35
Length=1961283
Score = 89.7 bits (98), Expect = 8e-13
Identities = 128/175 (73%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 125109 TTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGAT 125168
|||||||| |||||| | |||||||| ||| | || || || ||||| | || |||
Sbjct 1196629 TTGACTGATGATGAGCGTCACTTTATATCTCACGTATTAGCATTTTTTGCTGCTTCAGAT 1196688
Query 125169 GGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGG 125226
|| || ||||| || ||||| ||||| | |||||||||||| |||| | | | ||||
Sbjct 1196689 GGCATTGTCAATGAAAATCTTGTTGAAA-GATTCTCTCAAGAAGTTCA-AGTAACTGAGG 1196746
Query 125227 TGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA 125281
|| ||||| || |||||||| ||||| || || | || || ||||||||
Sbjct 1196747 CTAGATGTTTTTATGGGTTCCAAATAATGATGGAAAATATACATTCAGAAATGTA 1196801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740837576983000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |