Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq430 105 1e-17 seq35 89.7 8e-13 >seq430 Length=650307 Score = 105 bits (116), Expect = 1e-17 Identities = 233/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC-TGCGAG 70132 |||| || || || ||||| || ||| | || | || | |||||||||| ||| | Sbjct 88317 TGGGACCTGTTTATGGATTTCAATGGCGACATTATGGTGCTGAGTATGTAGATGTGC-AT 88259 Query 70133 ACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACC 70192 || || || || || | || |||||||| | || | |||| | || |||| || Sbjct 88258 ACTGATTACTCTGGAAAAGGCATTGATCAACTTCAAAACGTCATCAATACAATCAAAACT 88199 Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 || || |||||| | || | ||| | |||||||||| ||| | | ||||| Sbjct 88198 AACCCTGACGATAGGCGAATGCTTATGATCGCATGGAATCCATGTGATGTACCTAAAATG 88139 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC-TCGTACGATGGCAAATTGTCATG 70311 || ||||||||||||| ||| ||| ||||||| ||| ||||||| | |||| || Sbjct 88138 GCCTTACCACCGTGTCATTGTCTGGTACAGTTTTTTGTCGC-CGATGGCTATCTGTCGTG 88080 Query 70312 CTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTA 70371 |||||| || | || |||||||| || || ||||||||||| ||||| || || Sbjct 88079 TCAAATGTACCAACGATCAGCAGACATGGGTCTAGGAGTACCCTTTAATATTGCCAGTTA 88020 Query 70372 TTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAG 70415 ||| | | || | ||||| || || |||| || | |||| Sbjct 88019 TTCATTACTTACATATATGATAGCCCATGTTACTGGATTAAAAG 87976 >seq35 Length=1961283 Score = 89.7 bits (98), Expect = 8e-13 Identities = 128/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 125109 TTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGAT 125168 |||||||| |||||| | |||||||| ||| | || || || ||||| | || ||| Sbjct 1196629 TTGACTGATGATGAGCGTCACTTTATATCTCACGTATTAGCATTTTTTGCTGCTTCAGAT 1196688 Query 125169 GGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGG 125226 || || ||||| || ||||| ||||| | |||||||||||| |||| | | | |||| Sbjct 1196689 GGCATTGTCAATGAAAATCTTGTTGAAA-GATTCTCTCAAGAAGTTCA-AGTAACTGAGG 1196746 Query 125227 TGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA 125281 || ||||| || |||||||| ||||| || || | || || |||||||| Sbjct 1196747 CTAGATGTTTTTATGGGTTCCAAATAATGATGGAAAATATACATTCAGAAATGTA 1196801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740837576983000