Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq1477 284 3e-72 >seq1477 Length=14545 Score = 284 bits (314), Expect = 3e-72 Identities = 493/710 (69%), Gaps = 10/710 (1%) Strand=Plus/Plus Query 9182 GAGGAGGCTGCATAATGGGAAAAATTGCGGGAACAACGTATTTCAAAATCGATGGACAGC 9241 |||||| | ||||||| ||||| || || |||||||||||| |||| || | | Sbjct 1 GAGGAGAGCGAATAATGGCCCGTATTGCTGGTACCACGTATTTCAAACTCGACGGGCTTC 60 Query 9242 AACTGTCGGTAACCGGAGGGATTGAAGTCCCCATGAACACCAAAGTTCGTGACGACGTGA 9301 | ||||| | || || || |||||||| || ||||||||||| || || || |||| Sbjct 61 AGTTGTCGCTTACTGGCGGTATTGAAGTGCCGATGAACACCAAGGTAAACGATGATGTGA 120 Query 9302 TTGGCCTGGATGGTTCCGTTGACTACAAGGAAACCAGCCGGGCACCGTATACGAAGGTGA 9361 | ||||| |||||||| |||||| || ||||| ||| || || || | || | | Sbjct 121 TCGGCCTTGATGGTTCTGTTGACCGTAAAGAAACGCACCGCGCGCCCTACATTAAAGGCA 180 Query 9362 CCGCCAAAGTGCCGAAAAACTTCCCGGTCGATAAAATTACGTCTTCTGATGTTATGACCA 9421 || |||||||| || ||||||| || ||||| || || || |||||| Sbjct 181 CCTTTAAAGTGCCTAAGGGCTTCCCGCTCAGCAAAATCACCGAGTCCGACAGCATGACCG 240 Query 9422 TCACATCAGAGCTGGCAAATGGTCAGGTGTATGTTCTCTCAAACGCCTGGCTGCACGGCG 9481 || | || ||||| ||||||||||||||||| || | | ||||||||| || | Sbjct 241 GTACTGCTGAACTGGCGAATGGTCAGGTGTATGTCCTGACCGAAGCCTGGCTGTTTGGTG 300 Query 9482 AAGCCAACCATAACCCGGAAGAGGGCACCGTGGATCTTGAGTTCCACGGTGAGGAGGGAT 9541 | |||||||| || | ||||||||||| || || ||||| ||||||||| || |||| Sbjct 301 AGGCCAACCACAATGCTGAAGAGGGCACGGTTGACCTTGAATTCCACGGTTCTGAAGGAT 360 Query 9542 TTTACCAGTGATAAAAGAACTTGTGCTCAAAAAGCCGATTATGGCGCATAACGAAAAGCT 9601 | |||||||| |||||| | || || | || || ||| ||||| || || | ||| Sbjct 361 TCTACCAGTG---AAAGAATTGGTACTGACTAAACCCATTGTGGCGGCAAATGAGACGCT 417 Query 9602 TCATGTGCTGGAGCTGCGCGAACCGTCCTACGATGAAATCGAAGCCATT-GGTTTTCCGT 9660 |||||||||||| | ||||| || | || || ||| | | ||| || || |||| | Sbjct 418 TCATGTGCTGGAAATCCGCGAGCCAACTTATGACGAAGTTG-AGCAGTTCGGCATTCCTT 476 Query 9661 TCACCGTTTCCGGTGACGGCGGCGTCCGGCTGGACAGTTCGGTTGCGCTGAAATATATCC 9720 ||| | || ||| | | |||||| || ||||||||||||||| Sbjct 477 TCAGCTACAACGAATCCGGTGAAATGAAACTGGACTCCCGCGTCACGCTGAAATATATCC 536 Query 9721 CTGTGCTGGCAGGTATTCCACGCTCCTCGGCAGCGCAACTG--GCAAAACTGGATATTTT 9778 | || || |||| ||| || || || || ||||| ||||| || || ||| | || Sbjct 537 CGGTTCTTGCAGCTATCCCGCGTTCTTCAGCAGCAAAACTGACGCTCAA--AGATGTCTT 594 Query 9779 CAAAGCCTGTATGTTGATCCTCAAtttttttACCCGGTCGGAGACGGAGGAGGACTCAGA 9838 || || | ||| ||| | ||||||||| ||||||| ||| |||| ||||| Sbjct 595 CATGGCATCGATGACAATCGTTGGTTTTTTTACGGGGTCGGAAGCGGCGGAGAGTTCAGA 654 Query 9839 AAGCGGGTCTACAACACCGCATACTTCTGGCGAATAAACCCCCTGGAGCT 9888 ||||| |||| ||||||| |||||||||| ||||| || || ||||| Sbjct 655 AAGCGACTCTA-TACACCGCCCACTTCTGGCGCATAAATCCGCTTGAGCT 703 Score = 203 bits (224), Expect = 8e-48 Identities = 744/1145 (65%), Gaps = 49/1145 (4%) Strand=Plus/Plus Query 14368 ATTGATACCGTCAGAAAATGCCAGACTGCCGGACTGAAACTTAT--TGCCGG----TGaa 14421 || || |||| ||| |||||||||| ||| ||| | ||| |||||| ||| Sbjct 6579 ATCGACACCGCCAGTAAATGCCAGA-TGCTGGA-----AATTAGCATGCCGGGCAATGAG 6632 Query 14422 aa-aaaaGAGAATGTGGAGCATCTTGAACCTTACGGTTTCACCTCTGCAGCACAGAATGG 14480 | ||||| || | | || || ||||| || || || || || || ||||||| || || Sbjct 6633 AGCAAAAGCGA-TATCGAACAACTTGAGCCCTATGGCTTTACGTCAGCAGCACTGAGCGG 6691 Query 14481 CGCAGAAGCGGT---GGTATTGTTTCCCGGCGGTGACCGTTCGCACGGAGTGGCTGTGGT 14537 ||| || || || || | ||| | ||||| ||||| ||||| || | |||| Sbjct 6692 CGCGGAGGCCGTTGCGGCTTACTTT---GATGGTGATCGTTCACACGGCGTTGTGTTGGT 6748 Query 14538 TGTGGCTGACCGCCGCTTCAGACTGAAAGGGCTGGCGCGCGGGGAAGTCGCGCTATATGA 14597 || || || || || | | |||||||| | | ||| || || || | ||||| Sbjct 6749 GGTCGCGGATCGTCGGTATCGGCTGAAAGGCTTAAAGTCCGGTGAGGTTGCCATTTATGA 6808 Query 14598 CGATCAGGGGCAGTCGGTCACATTAACCCGAGCCGGAATAGTGGTAAATGGCGGCGGAAA 14657 ||| || | ||||||| || | || || | || || || || |||| ||||| || Sbjct 6809 CGACCAACAGAAGTCGGTAACCCTGACACGCACAGGGATTGTTGTGGATGGAGGCGGCAA 6868 Query 14658 GCCAGTTATTTTCACGAATGCCACTAAAGCACGTTTTGAAATGCCGATCGAATCCACTGG 14717 | | | | | || || | || || || ||||||||| || ||| |||| || Sbjct 6869 ACAGATCACCCTTAAAAACGCTCCAAAGGCGCGCTTTGAAATGGACATAGAAGCCACAGG 6928 Query 14718 CGATATCAGGGACAACTGTGACAGCAGTGGAAAAACGATGGCTGAAATGCGCACGACCTA 14777 | | |||| ||||||||||| | || | | ||||| | ||||| |||||| Sbjct 6929 CAACATCACTGACAACTGTGATTCTGGCGGCGTATCAATGGCCCAGATGCGTGTGACCTA 6988 Query 14778 TAACGGTCATACCCATAAAGAAAATGGCGATGGCGGCGGTATAACCGA--TAAGCCTGGC 14835 |||||| || | |||||||| || || || || ||||| | || || || |||| Sbjct 6989 TAACGGGCACAAGCATAAAGAGAACGGTGACGGTGGCGGCACTACGGACGCAACCCTG-- 7046 Query 14836 CAACCCATGAGCTGACACCATGATCCTTTATGTTAATGGAATCCGTAAGG----ATGCCA 14891 |||| ||| | ||| | ||||||||| ||||||| | | ||| | ||| Sbjct 7047 CAACAAATG-GGTGA-ATCATGATCCTCACGATTAATGGCAAGCAACAGGCGGTTTACCA 7104 Query 14892 CGGCTTCGCTCGACTTTCTGACGCGGGCAGTGGTGATTTCTCTTTTTACCTGGCGCCGGG 14951 ||| || ||| || || || || ||||| |||||||| || |||||| | | Sbjct 7105 --ACTT-ACT-GACCCGCTAACCCGTGCTGTGGTTATTTCTCTATTCACCTGGAGAAAAG 7160 Query 14952 CGGAGCGGGATGACAGGACCCCACAGCCATACGGCTGGTGGGGGGACACCTGGCCTGCTG 15011 | | || || | | | || | ||||||||||| ||||| | || ||| Sbjct 7161 CAGGCAAAGACGATGTGCCTGAAGAGTTCAATGGCTGGTGGGGCGACACGTTCCCCACTG 7220 Query 15012 TTCAGAATGACCGCATCGGTTCCCGCCTCTACCTGCTGAAACGCCGCAAACTCACCAATA 15071 | ||||||||||| ||||| |||||||| || | || || ||| ||||| || || Sbjct 7221 TGCAGAATGACCGAATCGGCTCCCGCCTTTATTTACTTAAGCGCTCAAAACTTACAAACC 7280 Query 15072 AAACGCCGCAGGATGCCCGCGAATACAT-GCAGCAGGCGCTGGCGTGGATGACAGACGAT 15130 | ||||||| | ||||| || ||||| |||| | |||||| |||| | || | ||| Sbjct 7281 AGACGCCGCTTAAAGCCCGTGAGTACATCGCAG-AAGCGCTGCAGTGGCTTACGGCTGAT 7339 Query 15131 GGCGTGGCGGCACGTATTGATGTGACATCTGAACGCACAGGAACAGATACCCTGGCAGCT 15190 || ||||| || || | || || || | || | || | | || || ||| | Sbjct 7340 GGTGTGGCCGCGCGGGTAGACGTCACTGCGCAAAGGCTTGGTATCAACGCCATGTCAGTT 7399 Query 15191 GGCGTGACGATATATCAGCGGGACGGGGTAA--TTCACAATATTACATTCGATGATATAT 15248 | | ||| || | | |||||| || | || | |||| || |||||| ||| Sbjct 7400 ACCACGGTTATACATAAACAGGACGGCACAACCCTGACGCT-TTAC-TTTGATGATTTAT 7457 Query 15249 GGAGCAAACTTAATGGCTGACAGTCAATTTGCACGTCCTGAACTTCCTCAGTTGATTGCT 15308 |||| |||| ||||||||| || |||| | || || ||| || ||| |||| | Sbjct 7458 GGAGTGAACTCAATGGCTGATAGCGGATTTTCCCGCCCGACACTCCCGCAGCTGATCACA 7517 Query 15309 ACCATTCGCAGCGATTTACTGACCCGTTTTCAGCAGGAT---------GTTGTGTTACGT 15359 || | || || || | || ||||| | | ||| | || | || Sbjct 7518 GCCGTGCGGAGTGACATTCTTACCCGCCTCGCGGCTGATTCAACGCTGGCTGAACTTCGC 7577 Query 15360 CGCATGGATGCCGAGGTTTACAGCCGGGTACAGGCTGCTGCCGTACATACGCTGTATGGT 15419 || | |||||| |||||||||||||| || | ||| || | || || || | ||||| Sbjct 7578 CGAACGGATGCAGAGGTTTACAGCCGCGTGCTGGCAGCATCGGTTCACACCGTCTATGGC 7637 Query 15420 TATATCGATTATCTGGCCCGGAATATGCTGCCTGATATGTGTGATGAGGACTGGCTTTAC 15479 || |||||||| || ||||| ||| | || |||||| | |||||| ||||||||| | Sbjct 7638 TACATCGATTACCTTGCCCGCAATCTTCTTCCTGATCTTGCTGATGAAGACTGGCTTACC 7697 Query 15480 CGTCA 15484 ||||| Sbjct 7698 CGTCA 7702 Score = 89.7 bits (98), Expect = 1e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 11963 TGATGCATCATTTCGTGGAGTGCCTTTCTCCGTTGAAGATGATGAAAGCACCTTTGGACG 12022 |||||| ||| ||||||| ||||||||| || || || ||||| ||| ||||| | Sbjct 3587 TGATGCCTCACTTCGTGGCGTGCCTTTCAAGGTCGATGAAGATGAGGCCACTTTTGGCAG 3646 Query 12023 CCGCGTACAGGTACATGAATATCCGAACAGGGATAAGCCCTGGACGGAGGATTTAGGTCG 12082 || || ||||| |||||||| || || | |||||||| ||| | || || | ||||| Sbjct 3647 GCGTGTTCAGGTTCATGAATACCCCAATCGCGATAAGCCATGGGCTGAAGACATGGGTCG 3706 Query 12083 CGCCACGCG 12091 |||||| || Sbjct 3707 CGCCACCCG 3715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128318733084350