Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_004617.1 Length=42722 Score E Sequences producing significant alignments: (Bits) Value seq3883 201 3e-47 >seq3883 Length=4185 Score = 201 bits (222), Expect = 3e-47 Identities = 403/592 (68%), Gaps = 14/592 (2%) Strand=Plus/Plus Query 23238 ACCGAAGACGAAAATATTATACTCTTGTTTCGCTTGCATTCAAGAATCTAAAGAATCCGA 23297 ||| || || ||| ||||| ||||| || || || ||||| |||||||| || || Sbjct 136 ACCCAAAACTAAAGAGTTATATAGTTGTTATGCATGTATCCAAGATTCTAAAGAGTCTGA 195 Query 23298 CACTCAAACGAATCTCAATACAGGTAGCAAATTCATTAAAACTATTATTATCAGAGATAC 23357 || ||||| | | | ||||||||||| || || || |||||| ||||||| ||||| | Sbjct 196 TACGCAAACAAGTATTAATACAGGTAGTAAGTTTATAAAAACTTTTATTATAAGAGACCC 255 Query 23358 ACGAGGTGATTATAAACCAACAAATAAGCATTACGTCTTGCATGAAGGGCAAAGATTTAA 23417 |||||||||||||||| | ||||||||||| || |||| ||||| | | | | Sbjct 256 TAGAGGTGATTATAAACCTAGTAATAAGCATTATGTTATGCACGAAGGTATTCGCTATGA 315 Query 23418 CATCAAATATGTAAAGCCAGATTATCAAGATAAATCTTATTTGCGTATCTATGGCGAGGT 23477 | || ||| | ||||||||||||| || ||||| | || || ||||||| ||||| Sbjct 316 TGTGAAGTATTTTAAGCCAGATTATCGTGACAAATCATTCTTACGAGTCTATGGTGAGGT 375 Query 23478 GGTCATTTAATGGGGGCAAGAATTGAAAGTAATAACATCGAACAAGGTTTGAAAAATGCA 23537 | | || || |||| || | |||||||| |||| || ||| || || ||||| | Sbjct 376 GTTAATATAGTGGGTGCTAAAATTGAAAAAAATACAATAGAATCTGGATT-AAAAAGAGA 434 Query 23538 GTTTTAAAAATGAATT--TAAATAG--TAATGTAATTGTCAAAGCTGGGGCTATGTCATT 23593 ||| | || || | || | ||| | || | | || || ||| || || Sbjct 435 GTT---ACTATCTTTTCCGAGATTGCAGAATAAAGTTTTAAGAGAAGGTGCTTCTTCTTT 491 Query 23594 AGTCCCGCTTTTAAAAAGTAATACACCT---TTTGCGAATACTAAAAAGCATGCTCGCGA 23650 | |||| | ||| | ||||||||| || || | ||| ||||| || Sbjct 492 AATCCCATTATTAGTTAAAAATACACCTAAAAGTGAGAGAAGCAAA---CATGCAAAAGA 548 Query 23651 TCACATAGCTGTTTCTAATGTGAAAACAGACAGACACACAAGTGAGAAAATTGTTACAAT 23710 || | || |||||||||| ||||| || ||| | | ||| ||| ||| ||| | Sbjct 549 CCATGTTGCAATTTCTAATGTCAAAACTGATAGAGATTCTTATGAAAAATATGTAACAGT 608 Query 23711 TGGTTACGCTAAAGGCGTCTCACATCGTATTCATGCAACAGAATTTGGAACAATGTACCA 23770 ||||| | ||||| ||| | ||||||| | ||||||||||| ||||| || Sbjct 609 AGGTTATGAAAAAGGATATAGTCATAGAATTCATGTCATTGAATTTGGAACCATGTATCA 668 Query 23771 AAAACCACAATTGTTTATAACAAAAACAGAAAAGCAAGGGAAAAACAAAGTT 23822 |||||||||||||||| | || |||| ||||| || | | ||||| |||| Sbjct 669 AAAACCACAATTGTTTGTCACTAAAAGTGAAAAAGAACGTAGAAACATAGTT 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136549993841400