Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 127 1e-24
seq276 104 2e-17
seq231 91.5 1e-13
seq86 84.2 2e-11
>seq2302
Length=121279
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| | || || || || ||||| || || |||||||| |||||||| |||
Sbjct 54104 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 54163
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | ||| || || || | ||||||||||||||||| |||
Sbjct 54164 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 54223
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||||||||| || ||| |||||| |||| |||| ||| ||| ||
Sbjct 54224 ATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACC 54283
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| || || || || || |||||||| |||||||||
Sbjct 54284 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCATA 54331
Score = 122 bits (134), Expect = 6e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| ||||| |||||||| || ||||| || |||||||| || || | | |||||
Sbjct 54347 AACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCT 54406
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| | ||| || || || | ||||||||||||||||| |||||| |||||||||||
Sbjct 54407 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCT 54466
Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
|| || ||| |||||| |||| |||| ||| || || || || || || ||
Sbjct 54467 TGGATCTTAGCT-TTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGT 54525
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|||||| |||| |||||| ||||| || ||||| ||
Sbjct 54526 TTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 54561
Score = 114 bits (126), Expect = 9e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| | || || || || ||||| || || |||||||| |||||||| |||
Sbjct 52964 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53023
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | ||| || ||||| | ||||||||||| ||||| |||
Sbjct 53024 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53083
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| || ||| ||| ||| |||| |||| ||| ||| ||
Sbjct 53084 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 53143
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| || || || || || || || || |||||||||
Sbjct 53144 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 53191
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| | || || || || ||||| || || |||||||| |||||||| |||
Sbjct 53192 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53251
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | ||| || || || | ||||||||||| ||||| |||
Sbjct 53252 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53311
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| || ||| ||| ||| |||| |||| ||| ||| ||
Sbjct 53312 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 53371
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| || || || || || || || || |||||||||
Sbjct 53372 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 53419
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| | || || || || ||||| || || |||||||| |||||||| |||
Sbjct 53420 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53479
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | ||| || || || | ||||||||||||||||| |||
Sbjct 53480 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 53539
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| || || ||| ||| |||| || | ||| ||| ||
Sbjct 53540 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53599
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| || ||||| || || || || || |||||||||
Sbjct 53600 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53647
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| | || || || || |||||||| || |||||||| ||||| || ||
Sbjct 52736 CCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAA 52795
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | ||| || || || | ||||||||||||||||| |||
Sbjct 52796 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 52855
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| || || ||| ||| |||| |||| ||| ||| ||
Sbjct 52856 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 52915
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| || || || || || || || || |||||||||
Sbjct 52916 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 52963
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| | || || || || ||||| || || |||||||| |||||||| |||
Sbjct 53648 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53707
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | ||| || || || | ||||||||||| ||||| |||
Sbjct 53708 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53767
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| || || ||| ||| |||| || | ||| ||| ||
Sbjct 53768 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53827
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| || ||||| || || || || || |||||||||
Sbjct 53828 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53875
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| | || || || || ||||| || || |||||||| |||||||| |||
Sbjct 53876 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53935
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | ||| || ||||| | |||||||||||||| || |||
Sbjct 53936 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 53995
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| || || ||| ||| |||| || | ||| ||| ||
Sbjct 53996 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 54055
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| || ||||| || || || || || || ||||||
Sbjct 54056 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCATA 54103
>seq276
Length=376631
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 7/229 (3%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
||||| ||||| || || ||||| || || || || ||| || | | | |||||
Sbjct 240720 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240661
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| || || || | || || || ||||| || ||| |||||||||||||| |
Sbjct 240660 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240601
Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||||| ||| || ||| |||| || | || |||||| || || || ||||||||
Sbjct 240600 ATTTTAGCT-TTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTT 240542
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT-----TGAAAATAAAA 15377
|| || |||||||| ||||| |||||||| || |||||| ||||
Sbjct 240541 TCCAGTAAGAGTTTTCACAAAGATTTGCATCTTGAGACTGAAAAAAAAA 240493
Score = 102 bits (112), Expect = 6e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
||||| ||||| || || ||||| || || || || ||| || | | | | |||||
Sbjct 241632 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCC 241573
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| || || || | || || || ||||| || ||| || ||||||||||| |
Sbjct 241572 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241513
Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||||| ||| || ||| |||| || | || | |||||| || || || ||||||||
Sbjct 241512 ATTTTAGCT-TTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTT 241454
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| ||||| ||||||||
Sbjct 241453 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
||||| ||||| || || ||||| || || || || ||| || | | | |||||
Sbjct 240948 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240889
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| || || || | || || || ||||| || ||| |||||||||||||| |
Sbjct 240888 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240829
Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||||| ||| || ||| |||| || | || |||||| || || || ||||||||
Sbjct 240828 ATTTTAGCT-TTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTT 240770
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| ||||| ||||||||
Sbjct 240769 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
||||| ||||| || || ||||| || || || || || || | | | |||||
Sbjct 241176 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCC 241117
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| || || || | || || || ||||| || ||| |||||||||||||| |
Sbjct 241116 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 241057
Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||||| ||| || ||| |||| || | ||| |||||| || || || ||||||||
Sbjct 241056 ATTTTCGCT-TTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTT 240998
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| ||||| ||||||||
Sbjct 240997 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
||||| ||||| || || ||||| || || || || ||| || | | | |||||
Sbjct 241404 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 241345
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| || || || | || || || ||||| || ||| || ||||||||||| |
Sbjct 241344 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241285
Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||||| ||| || ||| |||| || | || |||||| || || || ||||||||
Sbjct 241284 ATTTTAGCT-TTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTT 241226
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| ||||| ||||||||
Sbjct 241225 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196
>seq231
Length=580210
Score = 91.5 bits (100), Expect = 1e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| | || ||||| ||| | |||||||||||||| ||| ||| || ||||||||
Sbjct 340864 TCTTCAAGCTGCTTGCCGGCGAAGATCAAACGTTGTTGATCGGGTGGGATACCTTCTTTA 340923
Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
|| |||||| || ||| |||| || || || | || || || | ||| |||
Sbjct 340924 TCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCTGAAGACTCGACCTCAAGGGTGATG 340983
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| || ||||| || ||||| || ||||||||||| ||
Sbjct 340984 GTCTTCCCTGTAAGGGTTTTCACGAAAATTTGCATGTT 341021
>seq86
Length=815150
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||| ||| | ||| || || ||||| || |||||||| |||||||||||
Sbjct 596441 CCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 596500
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||||||||| || ||||||||||||| || || |||
Sbjct 596501 AAAGTACGGCCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAGGA 596560
Query 15257 ATTCCT 15262
|| |||
Sbjct 596561 ATACCT 596566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362073593638425
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