Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2302 127 1e-24 seq276 104 2e-17 seq231 91.5 1e-13 seq86 84.2 2e-11 >seq2302 Length=121279 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || || || || ||||| || || |||||||| |||||||| ||| Sbjct 54104 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 54163 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||| || || || | ||||||||||||||||| ||| Sbjct 54164 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 54223 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| || ||| |||||| |||| |||| ||| ||| || Sbjct 54224 ATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACC 54283 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || || || || || |||||||| ||||||||| Sbjct 54284 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCATA 54331 Score = 122 bits (134), Expect = 6e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || ||||| |||||||| || ||||| || |||||||| || || | | ||||| Sbjct 54347 AACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCT 54406 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || || || | ||||||||||||||||| |||||| ||||||||||| Sbjct 54407 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCT 54466 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || || ||| |||||| |||| |||| ||| || || || || || || || Sbjct 54467 TGGATCTTAGCT-TTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGT 54525 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||||| |||| |||||| ||||| || ||||| || Sbjct 54526 TTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 54561 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || || || || ||||| || || |||||||| |||||||| ||| Sbjct 52964 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53023 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||| || ||||| | ||||||||||| ||||| ||| Sbjct 53024 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53083 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| ||| |||| |||| ||| ||| || Sbjct 53084 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 53143 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || || || || || || || || ||||||||| Sbjct 53144 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 53191 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || || || || ||||| || || |||||||| |||||||| ||| Sbjct 53192 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53251 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||| || || || | ||||||||||| ||||| ||| Sbjct 53252 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53311 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| ||| |||| |||| ||| ||| || Sbjct 53312 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 53371 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || || || || || || || || ||||||||| Sbjct 53372 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 53419 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || || || || ||||| || || |||||||| |||||||| ||| Sbjct 53420 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53479 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||| || || || | ||||||||||||||||| ||| Sbjct 53480 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 53539 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || || ||| ||| |||| || | ||| ||| || Sbjct 53540 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53599 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || ||||| || || || || || ||||||||| Sbjct 53600 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53647 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || || || || |||||||| || |||||||| ||||| || || Sbjct 52736 CCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAA 52795 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||| || || || | ||||||||||||||||| ||| Sbjct 52796 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 52855 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || || ||| ||| |||| |||| ||| ||| || Sbjct 52856 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 52915 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || || || || || || || || ||||||||| Sbjct 52916 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 52963 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || || || || ||||| || || |||||||| |||||||| ||| Sbjct 53648 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53707 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||| || || || | ||||||||||| ||||| ||| Sbjct 53708 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53767 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || || ||| ||| |||| || | ||| ||| || Sbjct 53768 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53827 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || ||||| || || || || || ||||||||| Sbjct 53828 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53875 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || || || || ||||| || || |||||||| |||||||| ||| Sbjct 53876 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53935 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | ||| || ||||| | |||||||||||||| || ||| Sbjct 53936 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 53995 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || || ||| ||| |||| || | ||| ||| || Sbjct 53996 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 54055 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || ||||| || || || || || || |||||| Sbjct 54056 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCATA 54103 >seq276 Length=376631 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || || || || ||| || | | | ||||| Sbjct 240720 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240661 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || || | || || || ||||| || ||| |||||||||||||| | Sbjct 240660 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240601 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || | || |||||| || || || |||||||| Sbjct 240600 ATTTTAGCT-TTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTT 240542 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT-----TGAAAATAAAA 15377 || || |||||||| ||||| |||||||| || |||||| |||| Sbjct 240541 TCCAGTAAGAGTTTTCACAAAGATTTGCATCTTGAGACTGAAAAAAAAA 240493 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || || || || ||| || | | | | ||||| Sbjct 241632 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCC 241573 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || || | || || || ||||| || ||| || ||||||||||| | Sbjct 241572 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241513 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || | || | |||||| || || || |||||||| Sbjct 241512 ATTTTAGCT-TTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTT 241454 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 241453 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || || || || ||| || | | | ||||| Sbjct 240948 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240889 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || || | || || || ||||| || ||| |||||||||||||| | Sbjct 240888 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240829 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || | || |||||| || || || |||||||| Sbjct 240828 ATTTTAGCT-TTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTT 240770 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 240769 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || || || || || || | | | ||||| Sbjct 241176 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCC 241117 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || || | || || || ||||| || ||| |||||||||||||| | Sbjct 241116 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 241057 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || | ||| |||||| || || || |||||||| Sbjct 241056 ATTTTCGCT-TTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTT 240998 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 240997 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || || || || ||| || | | | ||||| Sbjct 241404 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 241345 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || || | || || || ||||| || ||| || ||||||||||| | Sbjct 241344 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241285 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || | || |||||| || || || |||||||| Sbjct 241284 ATTTTAGCT-TTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTT 241226 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 241225 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196 >seq231 Length=580210 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | || ||||| ||| | |||||||||||||| ||| ||| || |||||||| Sbjct 340864 TCTTCAAGCTGCTTGCCGGCGAAGATCAAACGTTGTTGATCGGGTGGGATACCTTCTTTA 340923 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| || ||| |||| || || || | || || || | ||| ||| Sbjct 340924 TCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCTGAAGACTCGACCTCAAGGGTGATG 340983 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || ||||| || ||||| || ||||||||||| || Sbjct 340984 GTCTTCCCTGTAAGGGTTTTCACGAAAATTTGCATGTT 341021 >seq86 Length=815150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| | ||| || || ||||| || |||||||| ||||||||||| Sbjct 596441 CCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 596500 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||||||||| || ||||||||||||| || || ||| Sbjct 596501 AAAGTACGGCCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAGGA 596560 Query 15257 ATTCCT 15262 || ||| Sbjct 596561 ATACCT 596566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362073593638425