Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2302 91.5 9e-14 seq276 89.7 3e-13 seq1265 87.8 1e-12 >seq2302 Length=121279 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||||||||| || | ||| || |||||||| || ||||| || || Sbjct 54103 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 54162 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || ||| || | ||||||||| ||| || |||||||| ||||| | || Sbjct 54163 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 54222 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| |||||| ||| ||| | || | || || Sbjct 54223 GATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCAC 54282 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || || ||||| || || || ||||| || |||||||| Sbjct 54283 CTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||||||||| || | ||| || |||||||| || ||||| || || Sbjct 52963 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53022 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || ||| || | |||||||||| ||| || |||||||||||||| | || Sbjct 53023 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGG 53082 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || | | | ||| || || ||| ||| | || | || Sbjct 53083 GATACCTTCCTTGTCTTGGATCTTGGCC---TTAACATTTTCAATGGAATCAGATGATTC 53139 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || || || ||||| || || || || ||||| |||||||| Sbjct 53140 CACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53190 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||||||||| || | ||| || |||||||| || ||||| || || Sbjct 53191 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53250 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || ||| || | ||||||||| ||| || |||||||||||||| | || Sbjct 53251 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 53310 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || | | | ||| || || ||| ||| | || | || Sbjct 53311 GATACCTTCCTTGTCTTGGATCTTGGCC---TTAACATTTTCAATGGAATCAGATGATTC 53367 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || || || ||||| || || || || ||||| |||||||| Sbjct 53368 CACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||||||||| || | ||| || |||||||| || ||||| || || Sbjct 53647 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53706 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || ||| || | ||||||||| ||| || |||||||||||||| | || Sbjct 53707 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 53766 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || | | | ||| || || ||| ||| | || | || Sbjct 53767 GATACCTTCCTTGTCTTGGATCTTAGCC---TTAACATTTTCAATAGAATCAGACGATTC 53823 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || || || ||||| || || || || ||||| |||||||| Sbjct 53824 CACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874 >seq276 Length=376631 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || || || | ||| || ||||| || ||||| || || || || | | || ||| Sbjct 240720 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240661 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||||||||| ||| ||||| || || || || | || || |||||||| || | Sbjct 240660 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240601 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| ||| | ||| | || || |||| |||||| |||||| Sbjct 240600 ATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTT 240541 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||||||||| || || |||||||| || Sbjct 240540 CCAGTAAGAGTTTTCACAAAGATTTGCATCTT 240509 >seq1265 Length=163832 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| |||||||| || | || || || | ||| |||||||| |||||||||||||||| Sbjct 84836 CACCACCTCTTAAACGAAGTACTAAGTGAAGTGTTGACTCTTTCTGTATATTGTAATCAG 84777 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | || | || ||||||||||| ||| ||| || | |||||| || |||| | Sbjct 84776 ATAGCGTGCGCCCATCTTCCAATTGCTTACCAGCAAAAATAAGACGTTGTTGATCCGGAG 84717 Query 33261 GTATGCCT 33268 | |||||| Sbjct 84716 GAATGCCT 84709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318684648934650