Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq276 100 2e-16
seq2302 82.4 5e-11
>seq276
Length=376631
Score = 100 bits (110), Expect = 2e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990
||||| ||||||||||| ||| ||| ||| |||| |||||||| ||||| |||||
Sbjct 240702 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 240643
Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050
|| || || || || || | || | |||||||| ||| |||||| ||| || |
Sbjct 240642 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 240583
Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110
||| || |||| | || || || | || || ||||| || || | ||| ||||||
Sbjct 240582 TCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACA 240523
Query 44111 AATATTTGCATGTCGAGTCT 44130
|| |||||||| | ||| ||
Sbjct 240522 AAGATTTGCATCTTGAGACT 240503
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990
||||| ||||||||||| ||| ||| ||| |||| |||||||| ||||| |||||
Sbjct 240930 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 240871
Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050
|| || || || || || | || | |||||||| ||| |||||| ||| || |
Sbjct 240870 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 240811
Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110
||| || |||| || || || || | || || ||||| || || | || ||||||
Sbjct 240810 TCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 240751
Query 44111 AATATTTGCAT 44121
|| ||||||||
Sbjct 240750 AAGATTTGCAT 240740
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990
||||| ||||||||||| || ||| ||| |||| |||||||| ||||| |||||
Sbjct 241158 TCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241099
Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050
|| || || || || || | || | |||||||| ||| |||||| ||| || |
Sbjct 241098 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTT 241039
Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110
||| || ||||| || || || || | || || ||||| || || | || ||||||
Sbjct 241038 TCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 240979
Query 44111 AATATTTGCAT 44121
|| ||||||||
Sbjct 240978 AAGATTTGCAT 240968
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990
||||| ||||||||||| ||| ||| ||| |||| |||||||| ||||| |||||
Sbjct 241386 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241327
Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050
|| || || || || || | || | |||||||| ||| |||||| ||| || |
Sbjct 241326 ATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 241267
Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110
||| || |||| || || || || | || || ||||| || || | || ||||||
Sbjct 241266 TCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 241207
Query 44111 AATATTTGCAT 44121
|| ||||||||
Sbjct 241206 AAGATTTGCAT 241196
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990
||||| ||||||||||| ||| ||| ||| |||| |||||||| ||||| |||||
Sbjct 241614 TCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241555
Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050
|| || || || || || | || | |||||||| ||| |||||| ||| || |
Sbjct 241554 ATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 241495
Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110
||| || |||| | || || || | || || ||||| || || | || ||||||
Sbjct 241494 TCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 241435
Query 44111 AATATTTGCAT 44121
|| ||||||||
Sbjct 241434 AAGATTTGCAT 241424
>seq2302
Length=121279
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| |||| | || |||||||| || || || ||||||||||| || || |||
Sbjct 53647 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53706
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| ||| | || || | ||| ||||| ||||| ||||| ||||||||||| | ||
Sbjct 53707 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 53766
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| |||||| || ||| || || || || | ||| || ||| | || |||||
Sbjct 53767 GATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCAC 53826
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | ||||| || || || || | ||||| || || ||||||||
Sbjct 53827 TTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| |||| | || |||||||| || || || ||||||||||| || || |||
Sbjct 54103 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 54162
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| ||| | || || | ||| ||||| ||||| ||||| ||||| ||||| | ||
Sbjct 54163 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 54222
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| ||||||||| ||| || || ||| || | ||| | ||| | | |||||
Sbjct 54223 GATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCAC 54282
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | ||||| || || || || | ||||| ||||| ||||||||
Sbjct 54283 CTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354674151840900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |