Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq276 100 2e-16 seq2302 82.4 5e-11 >seq276 Length=376631 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| ||||||||||| ||| ||| ||| |||| |||||||| ||||| ||||| Sbjct 240702 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 240643 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || || || || || | || | |||||||| ||| |||||| ||| || | Sbjct 240642 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 240583 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || |||| | || || || | || || ||||| || || | ||| |||||| Sbjct 240582 TCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACA 240523 Query 44111 AATATTTGCATGTCGAGTCT 44130 || |||||||| | ||| || Sbjct 240522 AAGATTTGCATCTTGAGACT 240503 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| ||||||||||| ||| ||| ||| |||| |||||||| ||||| ||||| Sbjct 240930 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 240871 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || || || || || | || | |||||||| ||| |||||| ||| || | Sbjct 240870 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 240811 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || |||| || || || || | || || ||||| || || | || |||||| Sbjct 240810 TCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 240751 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 240750 AAGATTTGCAT 240740 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| ||||||||||| || ||| ||| |||| |||||||| ||||| ||||| Sbjct 241158 TCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241099 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || || || || || | || | |||||||| ||| |||||| ||| || | Sbjct 241098 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTT 241039 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || ||||| || || || || | || || ||||| || || | || |||||| Sbjct 241038 TCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 240979 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 240978 AAGATTTGCAT 240968 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| ||||||||||| ||| ||| ||| |||| |||||||| ||||| ||||| Sbjct 241386 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241327 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || || || || || | || | |||||||| ||| |||||| ||| || | Sbjct 241326 ATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 241267 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || |||| || || || || | || || ||||| || || | || |||||| Sbjct 241266 TCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 241207 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 241206 AAGATTTGCAT 241196 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| ||||||||||| ||| ||| ||| |||| |||||||| ||||| ||||| Sbjct 241614 TCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241555 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || || || || || | || | |||||||| ||| |||||| ||| || | Sbjct 241554 ATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 241495 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || |||| | || || || | || || ||||| || || | || |||||| Sbjct 241494 TCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 241435 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 241434 AAGATTTGCAT 241424 >seq2302 Length=121279 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| | || |||||||| || || || ||||||||||| || || ||| Sbjct 53647 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53706 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| | || || | ||| ||||| ||||| ||||| ||||||||||| | || Sbjct 53707 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 53766 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| || || || || | ||| || ||| | || ||||| Sbjct 53767 GATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCAC 53826 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||||| || || |||||||| Sbjct 53827 TTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||| | || |||||||| || || || ||||||||||| || || ||| Sbjct 54103 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 54162 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| | || || | ||| ||||| ||||| ||||| ||||| ||||| | || Sbjct 54163 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 54222 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| || || ||| || | ||| | ||| | | ||||| Sbjct 54223 GATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCAC 54282 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||||| ||||| |||||||| Sbjct 54283 CTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354674151840900