Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq276 100 2e-16 >seq276 Length=376631 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || || || ||||| |||||||| || || || || ||| | ||| ||||||| Sbjct 241632 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCC 241573 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || ||| |||| | | ||||||||| || | ||||||||||| | Sbjct 241572 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241513 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | ||| ||| || || ||| ||||| || ||||||||| Sbjct 241512 ATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTG 241453 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | ||||| ||||| ||||||||| Sbjct 241452 CCAGTAAGGGTTTTCACAAAGATTTGCATT 241423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || || || ||||| |||||||| || || || || ||| | || ||||||| Sbjct 240948 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240889 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || ||| |||| | | ||||||||| || | ||||||||||| | Sbjct 240888 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240829 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | ||| ||| || | ||| ||||| || ||||||||| Sbjct 240828 ATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTG 240769 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | ||||| ||||| ||||||||| Sbjct 240768 CCAGTAAGGGTTTTCACAAAGATTTGCATT 240739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || || || ||||| |||||||| || || || || || | || ||||||| Sbjct 241176 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCC 241117 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || ||| |||| | | ||||||||| || | ||||||||||| | Sbjct 241116 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 241057 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | ||| |||||| | ||| ||||| || ||||||||| Sbjct 241056 ATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTG 240997 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | ||||| ||||| ||||||||| Sbjct 240996 CCAGTAAGGGTTTTCACAAAGATTTGCATT 240967 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || || || ||||| |||||||| || || || || ||| | || ||||||| Sbjct 241404 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 241345 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || ||| |||| | | ||||||||| || | ||||||||||| | Sbjct 241344 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241285 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | ||| ||| || | ||| ||||| || ||||||||| Sbjct 241284 ATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTG 241225 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | ||||| ||||| ||||||||| Sbjct 241224 CCAGTAAGGGTTTTCACAAAGATTTGCATT 241195 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || || || ||||| |||||||| || || || || ||| | || ||||||| Sbjct 240720 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240661 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || ||| |||| | | ||||||||| || | ||||||||||| | Sbjct 240660 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240601 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | ||| ||| || | ||| ||||| || |||||||| Sbjct 240600 ATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTT 240541 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACT 20217 || || | ||||| ||||| |||||||| || | ||| Sbjct 240540 CCAGTAAGAGTTTTCACAAAGATTTGCATCTTGAGACT 240503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419464854272925