Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq35 158 1e-33 seq1042 156 4e-33 >seq35 Length=1961283 Score = 158 bits (174), Expect = 1e-33 Identities = 148/186 (80%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 13403 TTTTCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATA 13462 ||||| || |||| |||||| || || || ||||||||||||||||||||||| ||| Sbjct 1196843 TTTTCTTTTGGGTCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATA 1196784 Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGA 13521 ||||||||| ||||||||| |||||||||||||||||||| | ||| |||||||| || Sbjct 1196783 TTTTCCATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGA 1196724 Query 13522 GTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 | | |||||||| | | ||||| || || || || || |||||||||||| || | Sbjct 1196723 G-AGAATCTTTCAACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAA 1196665 Query 13582 TATGTG 13587 || ||| Sbjct 1196664 TACGTG 1196659 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || ||||| || ||| |||| ||| ||||| | |||| ||| || Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||| |||||||| || || |||||||| ||||||||||| ||||| || Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCA 1197011 Query 13295 ATCAACCTTTCACCATACGTACTATTTTTACTCTCT-ATCCACTTTCTGGCCCAGTTTGC 13353 | |||||||||||| | || || || || || ||||| || ||||| | ||| Sbjct 1197010 ACTAACCTTTCACCAAAAGTTGCTTTACTA-TCACTGATCCATTTAAGAGCCCAATCTGC 1196952 Query 13354 TTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 || | ||| || || ||| |||| || || ||||||||| Sbjct 1196951 CTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 1196909 >seq1042 Length=111944 Score = 156 bits (172), Expect = 4e-33 Identities = 147/185 (79%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 13403 TTTTCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATA 13462 ||||| || |||| |||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 80515 TTTTCTTTGGGGTCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATA 80574 Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGA 13521 || || ||| ||||||||| |||||||||||||||||||| | ||| |||||||| || Sbjct 80575 TTCTCTATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGA 80634 Query 13522 GTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 | |||||| || | | ||||| ||||||| || | |||||| ||||| || || Sbjct 80635 G-AAAATCGTTTAACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAG 80693 Query 13582 TATGT 13586 ||||| Sbjct 80694 TATGT 80698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430856731592850