Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq35 158 1e-33
seq1042 156 4e-33
>seq35
Length=1961283
Score = 158 bits (174), Expect = 1e-33
Identities = 148/186 (80%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 13403 TTTTCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATA 13462
||||| || |||| |||||| || || || ||||||||||||||||||||||| |||
Sbjct 1196843 TTTTCTTTTGGGTCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATA 1196784
Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGA 13521
||||||||| ||||||||| |||||||||||||||||||| | ||| |||||||| ||
Sbjct 1196783 TTTTCCATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGA 1196724
Query 13522 GTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581
| | |||||||| | | ||||| || || || || || |||||||||||| || |
Sbjct 1196723 G-AGAATCTTTCAACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAA 1196665
Query 13582 TATGTG 13587
|| |||
Sbjct 1196664 TACGTG 1196659
Score = 107 bits (118), Expect = 2e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || ||||| || ||| |||| ||| ||||| | |||| ||| ||
Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| |||||||| |||||||| || || |||||||| ||||||||||| ||||| ||
Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCA 1197011
Query 13295 ATCAACCTTTCACCATACGTACTATTTTTACTCTCT-ATCCACTTTCTGGCCCAGTTTGC 13353
| |||||||||||| | || || || || || ||||| || ||||| | |||
Sbjct 1197010 ACTAACCTTTCACCAAAAGTTGCTTTACTA-TCACTGATCCATTTAAGAGCCCAATCTGC 1196952
Query 13354 TTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396
|| | ||| || || ||| |||| || || |||||||||
Sbjct 1196951 CTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 1196909
>seq1042
Length=111944
Score = 156 bits (172), Expect = 4e-33
Identities = 147/185 (79%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 13403 TTTTCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATA 13462
||||| || |||| |||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 80515 TTTTCTTTGGGGTCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATA 80574
Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGA 13521
|| || ||| ||||||||| |||||||||||||||||||| | ||| |||||||| ||
Sbjct 80575 TTCTCTATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGA 80634
Query 13522 GTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581
| |||||| || | | ||||| ||||||| || | |||||| ||||| || ||
Sbjct 80635 G-AAAATCGTTTAACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAG 80693
Query 13582 TATGT 13586
|||||
Sbjct 80694 TATGT 80698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430856731592850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |