Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq2959 273 6e-69 seq14394 140 9e-29 >seq2959 Length=4395 Score = 273 bits (302), Expect = 6e-69 Identities = 458/649 (71%), Gaps = 20/649 (3%) Strand=Plus/Minus Query 16564 GCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAGGTTGTTGAGAGAGGGAT 16623 |||||| ||| |||||||| ||||||||| ||| | |||| |||| ||| | | | Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGCT 1051 Query 16624 TGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCGTCACGAATGGACGATGA 16683 ||| || ||||||| |||| || | ||||| || || ||| ||||||||| || Sbjct 1050 TGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACGA 991 Query 16684 AGGATGGGCGAGAGTTGCAAGCGGGATG--AAG-TTGCTGGCAGATCTGGATGTGTGGGT 16740 ||| ||||| | ||| | || ||| ||| ||||| | |||| || || ||| | Sbjct 990 AGGCTGGGCAAAAGTCACCGCTGGAATGGGAAGATTGCTTG---ATCTCGACGTATGGAT 934 Query 16741 AGTTGACGC-ATCGCGTTTGTCTGTCGAAGAAATCAGGTCCATTTCCGAACGCCACAAGC 16799 || ||||| | | | | | || || | ||| | |||| ||||||| ||||||| Sbjct 933 TGTGGACGCCAGCAAGATGAAC-GTGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGC 875 Query 16800 AGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGGGCTAATTGAGAAACCAA 16859 | | || || || || || | | |||||| ||||| || ||||| || |||| Sbjct 874 GCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAA 815 Query 16860 AAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAGCCTGAAAGCG-ATGGCG 16918 | || || || || ||||| || || || || |||||||| |||||||| ||| ||||| Sbjct 814 AGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAA-GCGCATGGCA 756 Query 16919 AAAGACCTGAAAACTCCAGTTATCTCCCTAAGCCAGCTTTCACGCGATGTTGAGAAGCGG 16978 ||||| || ||||| || ||||| || || || ||||| || ||||||||||| ||||| Sbjct 755 AAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGC 696 Query 16979 CCAAA---CAAGCGC---CCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAG 17032 || || ||||| ||||| ||||| ||| |||| || || ||||||||||| ||| Sbjct 695 CCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAG 636 Query 17033 GATGCAGACTCAATCATCATGCTTTACCGTGAAGCGGTATACGACG-AGAA-CAGTAGCG 17090 || || ||| ||||||||||| ||||| ||||| || || |||| |||| | ||| Sbjct 635 GACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCAGCT 576 Query 17091 CCGCACCATTTGCTGAAATCATTGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTTT 17150 || | || || |||||||| || || |||||||| || || ||| || || || | Sbjct 575 GCGAA--GTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCT 518 Query 17151 ACCAGCGGTTCTGCAACGGACACTTTGTTGCATGTGACCAGGATGAAGC 17199 ||||| ||| ||||| || ||| || |||||||| ||||| Sbjct 517 ACCAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469 >seq14394 Length=813 Score = 140 bits (154), Expect = 9e-29 Identities = 130/162 (80%), Gaps = 5/162 (3%) Strand=Plus/Plus Query 2919 TGGGACAAAAACGGGACACACAAAGCTTTGCATCGGCTTGCAAGGCTTTGCATGTTTTTC 2978 || |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 478 TGAGACAGAAATGGGACACACAAAGCTTTGCATCGGTTTGCAAGGCTTTGCATGTTTTTC 537 Query 2979 GAAGATGGGACGTGTGAGCGCAGGTATGACGCGGTATG-TTGTTGACTTA--AAAGGTAG 3035 ||||||||||||||||||||| ||| | |||| | |||||| ||| |||||| Sbjct 538 GAAGATGGGACGTGTGAGCGCCTTAGTGATGGGGTAAGTTTGTTG--TTAGCTCAGGTAG 595 Query 3036 TTCTTATAATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTA 3077 ||| || | ||| || | |||||| |||||| ||||| Sbjct 596 TTCCAGGAACTTCTAAGCCGTATGTCGTACGTTCGAATCCTA 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132292003920050