Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_005841.1
Length=41391
Score E
Sequences producing significant alignments: (Bits) Value
seq2959 273 6e-69
seq14394 140 9e-29
>seq2959
Length=4395
Score = 273 bits (302), Expect = 6e-69
Identities = 458/649 (71%), Gaps = 20/649 (3%)
Strand=Plus/Minus
Query 16564 GCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAGGTTGTTGAGAGAGGGAT 16623
|||||| ||| |||||||| ||||||||| ||| | |||| |||| ||| | | |
Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGCT 1051
Query 16624 TGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCGTCACGAATGGACGATGA 16683
||| || ||||||| |||| || | ||||| || || ||| ||||||||| ||
Sbjct 1050 TGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACGA 991
Query 16684 AGGATGGGCGAGAGTTGCAAGCGGGATG--AAG-TTGCTGGCAGATCTGGATGTGTGGGT 16740
||| ||||| | ||| | || ||| ||| ||||| | |||| || || ||| |
Sbjct 990 AGGCTGGGCAAAAGTCACCGCTGGAATGGGAAGATTGCTTG---ATCTCGACGTATGGAT 934
Query 16741 AGTTGACGC-ATCGCGTTTGTCTGTCGAAGAAATCAGGTCCATTTCCGAACGCCACAAGC 16799
|| ||||| | | | | | || || | ||| | |||| ||||||| |||||||
Sbjct 933 TGTGGACGCCAGCAAGATGAAC-GTGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGC 875
Query 16800 AGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGGGCTAATTGAGAAACCAA 16859
| | || || || || || | | |||||| ||||| || ||||| || ||||
Sbjct 874 GCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAA 815
Query 16860 AAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAGCCTGAAAGCG-ATGGCG 16918
| || || || || ||||| || || || || |||||||| |||||||| ||| |||||
Sbjct 814 AGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAA-GCGCATGGCA 756
Query 16919 AAAGACCTGAAAACTCCAGTTATCTCCCTAAGCCAGCTTTCACGCGATGTTGAGAAGCGG 16978
||||| || ||||| || ||||| || || || ||||| || ||||||||||| |||||
Sbjct 755 AAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGC 696
Query 16979 CCAAA---CAAGCGC---CCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAG 17032
|| || ||||| ||||| ||||| ||| |||| || || ||||||||||| |||
Sbjct 695 CCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAG 636
Query 17033 GATGCAGACTCAATCATCATGCTTTACCGTGAAGCGGTATACGACG-AGAA-CAGTAGCG 17090
|| || ||| ||||||||||| ||||| ||||| || || |||| |||| | |||
Sbjct 635 GACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCAGCT 576
Query 17091 CCGCACCATTTGCTGAAATCATTGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTTT 17150
|| | || || |||||||| || || |||||||| || || ||| || || || |
Sbjct 575 GCGAA--GTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCT 518
Query 17151 ACCAGCGGTTCTGCAACGGACACTTTGTTGCATGTGACCAGGATGAAGC 17199
||||| ||| ||||| || ||| || |||||||| |||||
Sbjct 517 ACCAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469
>seq14394
Length=813
Score = 140 bits (154), Expect = 9e-29
Identities = 130/162 (80%), Gaps = 5/162 (3%)
Strand=Plus/Plus
Query 2919 TGGGACAAAAACGGGACACACAAAGCTTTGCATCGGCTTGCAAGGCTTTGCATGTTTTTC 2978
|| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 TGAGACAGAAATGGGACACACAAAGCTTTGCATCGGTTTGCAAGGCTTTGCATGTTTTTC 537
Query 2979 GAAGATGGGACGTGTGAGCGCAGGTATGACGCGGTATG-TTGTTGACTTA--AAAGGTAG 3035
||||||||||||||||||||| ||| | |||| | |||||| ||| ||||||
Sbjct 538 GAAGATGGGACGTGTGAGCGCCTTAGTGATGGGGTAAGTTTGTTG--TTAGCTCAGGTAG 595
Query 3036 TTCTTATAATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTA 3077
||| || | ||| || | |||||| |||||| |||||
Sbjct 596 TTCCAGGAACTTCTAAGCCGTATGTCGTACGTTCGAATCCTA 637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132292003920050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |