Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq4044 255 4e-63
>seq4044
Length=43136
Score = 255 bits (282), Expect = 4e-63
Identities = 567/841 (67%), Gaps = 15/841 (2%)
Strand=Plus/Minus
Query 60038 AATACGGTCAAAAACTGCTTTAGCAAAATCTTCCGCGGC--AATTCGCGCGTTCTTCAAT 60095
||| || ||||| ||||| || ||||| ||||| || || | || |||| || | |
Sbjct 43136 AATGCGATCAAATACTGCCTTTGCAAAGTCTTCAGCTGCTGATTTTGCGCTTT--TAAGC 43079
Query 60096 GCATCAGCACTACCAACATACGTTGCCGGGTTAGCTGAAATAACAGTGTCAAAAGACTCG 60155
|| |||| || ||| |||| ||||| || || ||||||||||| |||||||||| |||
Sbjct 43078 GCCTCAGAGCTTCCATCATAGGTTGCTGGATTTGCTGAAATAACTGTGTCAAAAGTCTCC 43019
Query 60156 CCGCAGCGTTCAAAACCGTCAAGGCGAGGGAGGAAGACATCAAGCATATCCCCACCGAAC 60215
|| |||||||| ||||| ||||| | || || | | || |||||||| |||||||
Sbjct 43018 CCACAGCGTTCGAAACCATCAAGCCTCGGCAGAACCATGTCGAGCATATCTGCACCGAAA 42959
Query 60216 ACTTCTTTAGCCAGGCTATGGCAATACTTATGGTCTGCCTTGTTACTCAACTTGGACATA 60275
|| ||||| ||| | ||||||||| || || || | ||||| | ||||||||
Sbjct 42958 ACCTCTTTGGCCTGACTATGGCAAATTTTGTGATCAGATTTGTTCAGGATTTTGGACATG 42899
Query 60276 AAACCAATGTTA--GTCGCAA--GCTGGCACTCGCAGCCTTCATCCGAAATGAGTTTCAC 60331
||||| | ||| | | | || || | | || | | | ||| | | | |
Sbjct 42898 AAACCGACATTACCGATGAGATTGCAGGTATGCCCATCTAT--TTCGATAGAA--TCAAT 42843
Query 60332 CAACTCAGGAAGGCGGGCAACGTATTTAAGCGATGAGTGGAAATCGACAGTTGCTGGCGG 60391
| |||| |||| ||| || | || || || || || ||||| || || || || ||
Sbjct 42842 GAGGGCAGGGAGGCTGGCCACAAACTTCAGGGAAGAATGAAAATCAACCGTCGCCGGTGG 42783
Query 60392 CAGAGGTGTAAACAGTATATTGGCCGAGGCCAAAGCA-TTTTTCAGGAAGGCGTCAAGGT 60450
||||| || |||| | | |||| |||| ||| ||||||||||| || ||||| |
Sbjct 42782 AAGAGGGGTCAACATCAGGTCTGCCGCC-CCAATGCAGTTTTTCAGGAACGCATCAAGAT 42724
Query 60451 GAGGACCACTATCAACGAGGATAAAGTCATAATCGCTCTTCAGCTTATCAATCACATTTT 60510
|||| |||||||||| || |||||||| || || || ||||| || || | || |
Sbjct 42723 GAGGGCCACTATCAAGGAAAATAAAGTCGTAGTCATACTGGAGCTTCTCGATAATGTTCT 42664
Query 60511 CTTTCAGGACAGCATGGATGTTCTGACCCGGTAGATGCTCATTGCACAGCTCTCTCCAAT 60570
|||| || || ||||| || || | || || ||||| || | ||||| | ||||
Sbjct 42663 CTTTAAGCACCGCATGAATATTTTTCCCTGGCAGATGTTCTTCGCACAATCCCTTCCAGC 42604
Query 60571 CGGATGCAATAAAGGCATCGTCAATCGACGCAGGCATAACGTCAACCCCAGGTACAACAG 60630
| |||| || ||||||||||| || || || || || ||||| || || | || |
Sbjct 42603 CTTCAGCAAGGAATGCATCGTCAATAGAAGCGGGAATTACATCAACGCCCGGGATAATTG 42544
Query 60631 AAGGAACAATAAACTCCTCTAACAGCTCTTCACGGCTTACATTCTGCAACATAGCCTGTG 60690
| || || ||||| || | | |||||||| || ||||| | ||| ||||| |
Sbjct 42543 ACGGCACGATAAAATCGGAAAGTAATTCTTCACGAGACACGTTCTGGAGCATGGCCTGAG 42484
Query 60691 CAGATGTTGCGTTTACGATACCAATAGAGTGTTTATGGCTTAAAAACATCGTTGCTGAAG 60750
||| || | || | ||| | || | | ||| | | | ||||| || || |
Sbjct 42483 CAGCCGTATTTTCAACCAAACCCACTGAATTCTCATGAC-TCAGAACATTGTCAGAGATG 42425
Query 60751 ATTGCGGATCAAGGTCAATAACCAGAATCCTTAAATCCTCCATAAGAAGATGAGGGTGAG 60810
|| ||||| | || || ||||||| | | ||| || | ||||| ||||| ||||
Sbjct 42424 CCTGAGGATCGAAATCGATGGCCAGAATACGCAGATCTTCGAACAGAAGCTGAGGATGAG 42365
Query 60811 CACGCATTGCATGCGCCAGAGAAACCGTCGATACAGTTTTTGACACACCGCCTTTAAGAT 60870
| || | ||||| | | ||| | || || || || || || |||| ||||||||||
Sbjct 42364 CCCGAAAAGCATGTGATAATGAAGCGGTAGAAACTGTCTTAGAACCACCACCTTTAAGAT 42305
Query 60871 T 60871
|
Sbjct 42304 T 42304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303146780879925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |