Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq4044 255 4e-63 >seq4044 Length=43136 Score = 255 bits (282), Expect = 4e-63 Identities = 567/841 (67%), Gaps = 15/841 (2%) Strand=Plus/Minus Query 60038 AATACGGTCAAAAACTGCTTTAGCAAAATCTTCCGCGGC--AATTCGCGCGTTCTTCAAT 60095 ||| || ||||| ||||| || ||||| ||||| || || | || |||| || | | Sbjct 43136 AATGCGATCAAATACTGCCTTTGCAAAGTCTTCAGCTGCTGATTTTGCGCTTT--TAAGC 43079 Query 60096 GCATCAGCACTACCAACATACGTTGCCGGGTTAGCTGAAATAACAGTGTCAAAAGACTCG 60155 || |||| || ||| |||| ||||| || || ||||||||||| |||||||||| ||| Sbjct 43078 GCCTCAGAGCTTCCATCATAGGTTGCTGGATTTGCTGAAATAACTGTGTCAAAAGTCTCC 43019 Query 60156 CCGCAGCGTTCAAAACCGTCAAGGCGAGGGAGGAAGACATCAAGCATATCCCCACCGAAC 60215 || |||||||| ||||| ||||| | || || | | || |||||||| ||||||| Sbjct 43018 CCACAGCGTTCGAAACCATCAAGCCTCGGCAGAACCATGTCGAGCATATCTGCACCGAAA 42959 Query 60216 ACTTCTTTAGCCAGGCTATGGCAATACTTATGGTCTGCCTTGTTACTCAACTTGGACATA 60275 || ||||| ||| | ||||||||| || || || | ||||| | |||||||| Sbjct 42958 ACCTCTTTGGCCTGACTATGGCAAATTTTGTGATCAGATTTGTTCAGGATTTTGGACATG 42899 Query 60276 AAACCAATGTTA--GTCGCAA--GCTGGCACTCGCAGCCTTCATCCGAAATGAGTTTCAC 60331 ||||| | ||| | | | || || | | || | | | ||| | | | | Sbjct 42898 AAACCGACATTACCGATGAGATTGCAGGTATGCCCATCTAT--TTCGATAGAA--TCAAT 42843 Query 60332 CAACTCAGGAAGGCGGGCAACGTATTTAAGCGATGAGTGGAAATCGACAGTTGCTGGCGG 60391 | |||| |||| ||| || | || || || || || ||||| || || || || || Sbjct 42842 GAGGGCAGGGAGGCTGGCCACAAACTTCAGGGAAGAATGAAAATCAACCGTCGCCGGTGG 42783 Query 60392 CAGAGGTGTAAACAGTATATTGGCCGAGGCCAAAGCA-TTTTTCAGGAAGGCGTCAAGGT 60450 ||||| || |||| | | |||| |||| ||| ||||||||||| || ||||| | Sbjct 42782 AAGAGGGGTCAACATCAGGTCTGCCGCC-CCAATGCAGTTTTTCAGGAACGCATCAAGAT 42724 Query 60451 GAGGACCACTATCAACGAGGATAAAGTCATAATCGCTCTTCAGCTTATCAATCACATTTT 60510 |||| |||||||||| || |||||||| || || || ||||| || || | || | Sbjct 42723 GAGGGCCACTATCAAGGAAAATAAAGTCGTAGTCATACTGGAGCTTCTCGATAATGTTCT 42664 Query 60511 CTTTCAGGACAGCATGGATGTTCTGACCCGGTAGATGCTCATTGCACAGCTCTCTCCAAT 60570 |||| || || ||||| || || | || || ||||| || | ||||| | |||| Sbjct 42663 CTTTAAGCACCGCATGAATATTTTTCCCTGGCAGATGTTCTTCGCACAATCCCTTCCAGC 42604 Query 60571 CGGATGCAATAAAGGCATCGTCAATCGACGCAGGCATAACGTCAACCCCAGGTACAACAG 60630 | |||| || ||||||||||| || || || || || ||||| || || | || | Sbjct 42603 CTTCAGCAAGGAATGCATCGTCAATAGAAGCGGGAATTACATCAACGCCCGGGATAATTG 42544 Query 60631 AAGGAACAATAAACTCCTCTAACAGCTCTTCACGGCTTACATTCTGCAACATAGCCTGTG 60690 | || || ||||| || | | |||||||| || ||||| | ||| ||||| | Sbjct 42543 ACGGCACGATAAAATCGGAAAGTAATTCTTCACGAGACACGTTCTGGAGCATGGCCTGAG 42484 Query 60691 CAGATGTTGCGTTTACGATACCAATAGAGTGTTTATGGCTTAAAAACATCGTTGCTGAAG 60750 ||| || | || | ||| | || | | ||| | | | ||||| || || | Sbjct 42483 CAGCCGTATTTTCAACCAAACCCACTGAATTCTCATGAC-TCAGAACATTGTCAGAGATG 42425 Query 60751 ATTGCGGATCAAGGTCAATAACCAGAATCCTTAAATCCTCCATAAGAAGATGAGGGTGAG 60810 || ||||| | || || ||||||| | | ||| || | ||||| ||||| |||| Sbjct 42424 CCTGAGGATCGAAATCGATGGCCAGAATACGCAGATCTTCGAACAGAAGCTGAGGATGAG 42365 Query 60811 CACGCATTGCATGCGCCAGAGAAACCGTCGATACAGTTTTTGACACACCGCCTTTAAGAT 60870 | || | ||||| | | ||| | || || || || || || |||| |||||||||| Sbjct 42364 CCCGAAAAGCATGTGATAATGAAGCGGTAGAAACTGTCTTAGAACCACCACCTTTAAGAT 42305 Query 60871 T 60871 | Sbjct 42304 T 42304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303146780879925