Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_005857.1
Length=51601
Score E
Sequences producing significant alignments: (Bits) Value
seq14394 89.7 2e-13
seq1922 87.8 6e-13
seq3495 82.4 3e-11
>seq14394
Length=813
Score = 89.7 bits (98), Expect = 2e-13
Identities = 247/371 (67%), Gaps = 17/371 (5%)
Strand=Plus/Plus
Query 26050 AGACTATGTGGAAAAGCAGCTTTCGCTTGATGAAAAGTTCAT--TAAGCAT-CCGGCAGC 26106
|||||| || ||| ||| | ||||| || ||| ||| |||||| || || ||
Sbjct 117 AGACTACGTAGAAGAGCGCATATCGCTAGAC---AAGCGCATCATAAGCAGACCAGCGGC 173
Query 26107 TACGTATTTTATGCGAGCAGCAAATACATGTTATCGTGCAGGAATCCTGCAAGGTGCCCT 26166
|||||| ||||| |||| | || ||||||| ||| ||| || | || || ||
Sbjct 174 TACGTACTTTATTAGAGCTGGTGCGACGCACTATCGTGAAGGCATCATGAACGGCGCTCT 233
Query 26167 GCTTGTTATCGATGCATCGCTTAATCCTTGTGATGGTTCTTTGTTGGTATGTGCTCTTGA 26226
||| || ||||||| || || ||||| |||||||| || ||| ||||||| | ||
Sbjct 234 GCTGGTAGTCGATGCGTCACTGAATCCGTGTGATGGCTCATTGCTGGTATGCAGGATGGA 293
Query 26227 TGGAGAGTTTAGGGTTAAACGCTACAGGATGGCACCTAAACCGCATCTTGAAGATTT--- 26283
|| ||| | ||| | || ||||| | | | || | || || |||||||||||
Sbjct 294 AGGCGAGCTGAGGATAAAGCGCTATCGTAAGCATCCACAGCCACACCTTGAAGATTTGCA 353
Query 26284 GAC-ATCAGGTCGAAAGGAAGCGCTGCCGAGTCAGGAGGA---TAATTGTCCACCAGCTG 26339
||| |||| ||| |||| | | || ||| || || | | || |||
Sbjct 354 GACTGGCAGG-CGA---GAAGAGATACCAGTTCACGATGACGGAACGAGCCCGGATGCTA 409
Query 26340 TTTTTGGTGTGATCACGTACATAATTAATGATGCGCGATTAGGAGAGTTTGATGATTGCC 26399
| ||||| |||||||| ||| || || ||| | | || |||||||| |||||||
Sbjct 410 TCTTTGGGGTGATCACATACTGCATCAACGATATGAGGGCGGGTGAGTTTGACGATTGCC 469
Query 26400 CTGTTATGTGA 26410
| |||||||||
Sbjct 470 CGGTTATGTGA 480
>seq1922
Length=5457
Score = 87.8 bits (96), Expect = 6e-13
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 25729 TCAGCTTCTTCAAACATTTCCTGAATGGCCTGGCTGATTTGCTCTTTCTCATGTTTCTTT 25788
||||||||||||||||| ||||| | || |||| || || || |||||||| || |
Sbjct 1964 TCAGCTTCTTCAAACATCTCCTGCACAACCCGGCTTATCTGTTCCTTCTCATGCTTGCTC 1905
Query 25789 GCATCGGTATTGATGGACGCCATCGTCATCATGGGTTTCACCCGGATATCGGCATCAGGA 25848
||||| || ||||| | | || ||||||||| ||||| || || | || ||||| ||
Sbjct 1904 GCATCAGTGTTGATCGCTGGCAGCGTCATCATCGGTTTAACGCGAACTTCTGCATCCGGG 1845
Query 25849 AAGATGCG 25856
|| | |||
Sbjct 1844 AAAACGCG 1837
>seq3495
Length=4271
Score = 82.4 bits (90), Expect = 3e-11
Identities = 141/201 (70%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 17535 AGCTGAACTGGGAGTTCCCGGAGGGGAGCGGCGATACGCAGAAAACCGAGCTGCAGTACA 17594
|||||||||||| ||||||| | | || || |||| ||| || || | |||||||
Sbjct 781 AGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTCAGTACA 722
Query 17595 GTCCTAATCCCAACGGCA-ACGGGGCGATGGCGCTGTCTGATGTGGCGTATCCGG---GC 17650
| ||| | | || | ||| || || |||| ||||||| | || ||| ||
Sbjct 721 G-CCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGCAGCGC 663
Query 17651 AAAACCTATCAGCAGATGGGCCTGCAGATTGCGGCGATGTTCTGGTACCGCGCGCGGATC 17710
||| ||||||||||||||||| | || | | | |||||||||||||||| | |
Sbjct 662 AAA---TATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGCTG 606
Query 17711 GTTGACCGTATCGGCAATGAA 17731
|| ||||| | ||||||||||
Sbjct 605 GTGGACCGAACCGGCAATGAA 585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 164954721498550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |