Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq14394 89.7 2e-13 seq1922 87.8 6e-13 seq3495 82.4 3e-11 >seq14394 Length=813 Score = 89.7 bits (98), Expect = 2e-13 Identities = 247/371 (67%), Gaps = 17/371 (5%) Strand=Plus/Plus Query 26050 AGACTATGTGGAAAAGCAGCTTTCGCTTGATGAAAAGTTCAT--TAAGCAT-CCGGCAGC 26106 |||||| || ||| ||| | ||||| || ||| ||| |||||| || || || Sbjct 117 AGACTACGTAGAAGAGCGCATATCGCTAGAC---AAGCGCATCATAAGCAGACCAGCGGC 173 Query 26107 TACGTATTTTATGCGAGCAGCAAATACATGTTATCGTGCAGGAATCCTGCAAGGTGCCCT 26166 |||||| ||||| |||| | || ||||||| ||| ||| || | || || || Sbjct 174 TACGTACTTTATTAGAGCTGGTGCGACGCACTATCGTGAAGGCATCATGAACGGCGCTCT 233 Query 26167 GCTTGTTATCGATGCATCGCTTAATCCTTGTGATGGTTCTTTGTTGGTATGTGCTCTTGA 26226 ||| || ||||||| || || ||||| |||||||| || ||| ||||||| | || Sbjct 234 GCTGGTAGTCGATGCGTCACTGAATCCGTGTGATGGCTCATTGCTGGTATGCAGGATGGA 293 Query 26227 TGGAGAGTTTAGGGTTAAACGCTACAGGATGGCACCTAAACCGCATCTTGAAGATTT--- 26283 || ||| | ||| | || ||||| | | | || | || || ||||||||||| Sbjct 294 AGGCGAGCTGAGGATAAAGCGCTATCGTAAGCATCCACAGCCACACCTTGAAGATTTGCA 353 Query 26284 GAC-ATCAGGTCGAAAGGAAGCGCTGCCGAGTCAGGAGGA---TAATTGTCCACCAGCTG 26339 ||| |||| ||| |||| | | || ||| || || | | || ||| Sbjct 354 GACTGGCAGG-CGA---GAAGAGATACCAGTTCACGATGACGGAACGAGCCCGGATGCTA 409 Query 26340 TTTTTGGTGTGATCACGTACATAATTAATGATGCGCGATTAGGAGAGTTTGATGATTGCC 26399 | ||||| |||||||| ||| || || ||| | | || |||||||| ||||||| Sbjct 410 TCTTTGGGGTGATCACATACTGCATCAACGATATGAGGGCGGGTGAGTTTGACGATTGCC 469 Query 26400 CTGTTATGTGA 26410 | ||||||||| Sbjct 470 CGGTTATGTGA 480 >seq1922 Length=5457 Score = 87.8 bits (96), Expect = 6e-13 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25729 TCAGCTTCTTCAAACATTTCCTGAATGGCCTGGCTGATTTGCTCTTTCTCATGTTTCTTT 25788 ||||||||||||||||| ||||| | || |||| || || || |||||||| || | Sbjct 1964 TCAGCTTCTTCAAACATCTCCTGCACAACCCGGCTTATCTGTTCCTTCTCATGCTTGCTC 1905 Query 25789 GCATCGGTATTGATGGACGCCATCGTCATCATGGGTTTCACCCGGATATCGGCATCAGGA 25848 ||||| || ||||| | | || ||||||||| ||||| || || | || ||||| || Sbjct 1904 GCATCAGTGTTGATCGCTGGCAGCGTCATCATCGGTTTAACGCGAACTTCTGCATCCGGG 1845 Query 25849 AAGATGCG 25856 || | ||| Sbjct 1844 AAAACGCG 1837 >seq3495 Length=4271 Score = 82.4 bits (90), Expect = 3e-11 Identities = 141/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 17535 AGCTGAACTGGGAGTTCCCGGAGGGGAGCGGCGATACGCAGAAAACCGAGCTGCAGTACA 17594 |||||||||||| ||||||| | | || || |||| ||| || || | ||||||| Sbjct 781 AGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTCAGTACA 722 Query 17595 GTCCTAATCCCAACGGCA-ACGGGGCGATGGCGCTGTCTGATGTGGCGTATCCGG---GC 17650 | ||| | | || | ||| || || |||| ||||||| | || ||| || Sbjct 721 G-CCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGCAGCGC 663 Query 17651 AAAACCTATCAGCAGATGGGCCTGCAGATTGCGGCGATGTTCTGGTACCGCGCGCGGATC 17710 ||| ||||||||||||||||| | || | | | |||||||||||||||| | | Sbjct 662 AAA---TATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGCTG 606 Query 17711 GTTGACCGTATCGGCAATGAA 17731 || ||||| | |||||||||| Sbjct 605 GTGGACCGAACCGGCAATGAA 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164954721498550