Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq225 129 7e-25
seq430 109 7e-19
seq322 82.4 9e-11
>seq225
Length=1067286
Score = 129 bits (142), Expect = 7e-25
Identities = 157/211 (74%), Gaps = 6/211 (3%)
Strand=Plus/Plus
Query 164497 AAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAA 164556
|| ||||| || ||||| | ||||| ||||| || ||| || ||||| ||||||
Sbjct 324573 AACTTAGGGTGCAAACACGTCAAAGGTATTTTGCTATTTGGTCCACCTGGAACTGGTAAA 324632
Query 164557 ACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTT 164613
|||||||||||| || |||| ||| | |||||| || || || |||||||||
Sbjct 324633 ACATTAATGGCTAGACAAATTGGACAAA-TGTTAAATGCACGTGAACCC--AAAATTGTT 324689
Query 164614 AATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTG 164673
||||| ||| || | ||| |||||||||| ||||| || ||||| ||| | |||| ||
Sbjct 324690 AATGGCCCTCAAATTTTGGACAAATATGTTGGTGAATCTGAAGCAAATATAAGAAGATTA 324749
Query 164674 TTTCAGGAGGCTGAAGAAGAACAAAAGAAAG 164704
|| || |||||||||||| |||||||||
Sbjct 324750 TTCGCAGATGCTGAAGAAGAAGAAAAGAAAG 324780
>seq430
Length=650307
Score = 109 bits (120), Expect = 7e-19
Identities = 130/174 (75%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 7222 AAATCACCTTCTTCACGATGATTAAATCCTAATCGATT-TAAATTAGATTTTGATCCATA 7280
|||| ||||||||| |||| | ||| ||| |||||| | ||||| ||| || | |
Sbjct 88501 AAATTACCTTCTTCGCGATCAGTAAGTCC-AATCGAGTCTAAATAAGAACGTGTGCTGTT 88559
Query 7281 AGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAG 7340
|||||||||| | |||| ||||| |||| | | ||||||||| || |||||||
Sbjct 88560 TGCATCCCAAACTTTTACATCTTTTTCAGATAGTTCTTTAGAATTTGTCGAGCCTTTAAT 88619
Query 7341 GAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAA 7394
|||||||| | |||||| || | ||||||||||||| |||||||| || ||
Sbjct 88620 AAACCATAATAATTCTTCGACAACACCACGCCAAAACACCCTTTTTGTTGTCAA 88673
>seq322
Length=669892
Score = 82.4 bits (90), Expect = 9e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413
||||||| |||| |||||||| |||||||| || ||||||||| |||||||| ||
Sbjct 12604 AATACCTCAAATTGGTGATAAATTTGCTTCCCGGCATGGTCAAAAAGGAACATGTGGAAT 12545
Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473
|| | || |||||||||||||| ||| || || || || ||| |||||||
Sbjct 12544 ACAATACAGACAGGAAGATATGCCTTTCACTTGTGAAGGCATCACACCTGATATTATTAT 12485
Query 19474 TAACCCACATGCT 19486
||| || || |||
Sbjct 12484 TAATCCTCACGCT 12472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595693797030000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |