Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq225 129 7e-25 seq430 109 7e-19 seq322 82.4 9e-11 >seq225 Length=1067286 Score = 129 bits (142), Expect = 7e-25 Identities = 157/211 (74%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 164497 AAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAA 164556 || ||||| || ||||| | ||||| ||||| || ||| || ||||| |||||| Sbjct 324573 AACTTAGGGTGCAAACACGTCAAAGGTATTTTGCTATTTGGTCCACCTGGAACTGGTAAA 324632 Query 164557 ACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTT 164613 |||||||||||| || |||| ||| | |||||| || || || ||||||||| Sbjct 324633 ACATTAATGGCTAGACAAATTGGACAAA-TGTTAAATGCACGTGAACCC--AAAATTGTT 324689 Query 164614 AATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTG 164673 ||||| ||| || | ||| |||||||||| ||||| || ||||| ||| | |||| || Sbjct 324690 AATGGCCCTCAAATTTTGGACAAATATGTTGGTGAATCTGAAGCAAATATAAGAAGATTA 324749 Query 164674 TTTCAGGAGGCTGAAGAAGAACAAAAGAAAG 164704 || || |||||||||||| ||||||||| Sbjct 324750 TTCGCAGATGCTGAAGAAGAAGAAAAGAAAG 324780 >seq430 Length=650307 Score = 109 bits (120), Expect = 7e-19 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 7222 AAATCACCTTCTTCACGATGATTAAATCCTAATCGATT-TAAATTAGATTTTGATCCATA 7280 |||| ||||||||| |||| | ||| ||| |||||| | ||||| ||| || | | Sbjct 88501 AAATTACCTTCTTCGCGATCAGTAAGTCC-AATCGAGTCTAAATAAGAACGTGTGCTGTT 88559 Query 7281 AGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAG 7340 |||||||||| | |||| ||||| |||| | | ||||||||| || ||||||| Sbjct 88560 TGCATCCCAAACTTTTACATCTTTTTCAGATAGTTCTTTAGAATTTGTCGAGCCTTTAAT 88619 Query 7341 GAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAA 7394 |||||||| | |||||| || | ||||||||||||| |||||||| || || Sbjct 88620 AAACCATAATAATTCTTCGACAACACCACGCCAAAACACCCTTTTTGTTGTCAA 88673 >seq322 Length=669892 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||||||| |||| |||||||| |||||||| || ||||||||| |||||||| || Sbjct 12604 AATACCTCAAATTGGTGATAAATTTGCTTCCCGGCATGGTCAAAAAGGAACATGTGGAAT 12545 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 || | || |||||||||||||| ||| || || || || ||| ||||||| Sbjct 12544 ACAATACAGACAGGAAGATATGCCTTTCACTTGTGAAGGCATCACACCTGATATTATTAT 12485 Query 19474 TAACCCACATGCT 19486 ||| || || ||| Sbjct 12484 TAATCCTCACGCT 12472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595693797030000