Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq611 104 1e-17 >seq611 Length=234137 Score = 104 bits (114), Expect = 1e-17 Identities = 172/243 (71%), Gaps = 14/243 (6%) Strand=Plus/Plus Query 3902 GGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTG 3961 ||||| || ||||| |||||||||| | | |||||||| ||||| ||| |||||||| Sbjct 136684 GGGTTTTCTGTTGATGGTCAAGAAAGTTTCCAAGAAATTTTATCTAAACGATTGTATTTG 136743 Query 3962 TGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCAT----TGTGTTATCAA 4017 |||||| ||| ||| |||| || | | | ||||| ||| ||||| || Sbjct 136744 TGTCAAGCTTTGGCTGCTTTGAGTATTCTTCAACCGGGTGGACATTTCATGTGT----AA 136799 Query 4018 ATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTA-TAGATCTT 4076 | |||| |||||||| || ||||||||||||||| ||| | |||| ||| || Sbjct 136800 ACTTTTTGATATATTCACTGAATTTAGTGCTGGTTTATTGTTCCTTTTGTACCAGA-GTT 136858 Query 4077 TTAATCGTATTTGTATTTTCAAACCA--CATTCATCGCGACCGGCCAATTCTGAAAGATA 4134 |||| | || |||||| ||||||| || |||| || || ||||||||||| || Sbjct 136859 TTAAACAAATCAGTATTTACAAACCAGTCACGAGTCGC--CCTGCAAATTCTGAAAGGTA 136916 Query 4135 TTT 4137 || Sbjct 136917 ATT 136919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276472960859275