Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq213 120 2e-22 seq76 120 2e-22 seq217 116 2e-21 seq19714 114 7e-21 seq331 114 7e-21 seq150 114 7e-21 seq780 109 3e-19 >seq213 Length=943558 Score = 120 bits (132), Expect = 2e-22 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| || ||||||||| ||||||||||| |||||||||| |||||||||||| Sbjct 539340 TATATAAAAAATAAAAAAAATGATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGT 539399 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 539400 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 539437 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| | | ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 538168 ATAAAAAAACTTAGATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 538109 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 538108 GACGCTCTAACCAACTGAGCTAATGGGCC 538080 >seq76 Length=813717 Score = 120 bits (132), Expect = 2e-22 Identities = 103/124 (83%), Gaps = 7/124 (6%) Strand=Plus/Minus Query 11434 TAGAA-TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||||| |||| ||||||| || |||||||| |||||||||| ||||||||||||| Sbjct 152869 TAGAAGTTAAAAAAAAATTTGAT-GGCCCATGGGGGGATCGAACCCACGACCTTCGCGTT 152811 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGA----TTGTGATTTT 11547 |||||||||||||||| |||||||||||||||||||| | ||| || ||||||||| Sbjct 152810 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCAGGCGATGAGTCCCTGTGATTTT 152751 Query 11548 TCAT 11551 | || Sbjct 152750 TGAT 152747 >seq217 Length=594888 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || | ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 144080 AAAAAACATACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 144021 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 144020 CTCTAACCAACTGAGCTAATGGGCCG 143995 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || | ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 152347 AAAAAACATACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 152288 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 152287 CTCTAACCAACTGAGCTAATGGGCCG 152262 >seq19714 Length=5428 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 3811 AAAAATTTATTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 3870 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 3871 CTCTAACCAACTGAGCTAATGGGCC 3895 >seq331 Length=568338 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 46537 AAAAATTTATTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 46596 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 46597 CTCTAACCAACTGAGCTAATGGGCC 46621 >seq150 Length=973894 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| ||||||| | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 943763 TTACTAAAAAA--ATTTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGC 943820 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 943821 ACGACGCTCTAACCAACTGAGCTAATGGGCC 943851 >seq780 Length=172557 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13520 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13461 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 13460 TGAGCTAATGGGCC 13447 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261414952843300