Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq213 120 2e-22
seq76 120 2e-22
seq217 116 2e-21
seq19714 114 7e-21
seq331 114 7e-21
seq150 114 7e-21
seq780 109 3e-19
>seq213
Length=943558
Score = 120 bits (132), Expect = 2e-22
Identities = 85/98 (87%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491
|||| || ||||||||| ||||||||||| |||||||||| ||||||||||||
Sbjct 539340 TATATAAAAAATAAAAAAAATGATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGT 539399
Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||| ||||||||||||||||||||
Sbjct 539400 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 539437
Score = 109 bits (120), Expect = 3e-19
Identities = 78/89 (88%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 11442 ATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||||| | | ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 538168 ATAAAAAAACTTAGATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 538109
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 538108 GACGCTCTAACCAACTGAGCTAATGGGCC 538080
>seq76
Length=813717
Score = 120 bits (132), Expect = 2e-22
Identities = 103/124 (83%), Gaps = 7/124 (6%)
Strand=Plus/Minus
Query 11434 TAGAA-TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492
||||| |||| ||||||| || |||||||| |||||||||| |||||||||||||
Sbjct 152869 TAGAAGTTAAAAAAAAATTTGAT-GGCCCATGGGGGGATCGAACCCACGACCTTCGCGTT 152811
Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGA----TTGTGATTTT 11547
|||||||||||||||| |||||||||||||||||||| | ||| || |||||||||
Sbjct 152810 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCAGGCGATGAGTCCCTGTGATTTT 152751
Query 11548 TCAT 11551
| ||
Sbjct 152750 TGAT 152747
>seq217
Length=594888
Score = 116 bits (128), Expect = 2e-21
Identities = 77/86 (90%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || | ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 144080 AAAAAACATACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 144021
Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530
|||| |||||||||||||||||||||
Sbjct 144020 CTCTAACCAACTGAGCTAATGGGCCG 143995
Score = 116 bits (128), Expect = 2e-21
Identities = 77/86 (90%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || | ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 152347 AAAAAACATACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 152288
Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530
|||| |||||||||||||||||||||
Sbjct 152287 CTCTAACCAACTGAGCTAATGGGCCG 152262
>seq19714
Length=5428
Score = 114 bits (126), Expect = 7e-21
Identities = 76/85 (89%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| | |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 3811 AAAAATTTATTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 3870
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||||||||
Sbjct 3871 CTCTAACCAACTGAGCTAATGGGCC 3895
>seq331
Length=568338
Score = 114 bits (126), Expect = 7e-21
Identities = 76/85 (89%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| | |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 46537 AAAAATTTATTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 46596
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||||||||
Sbjct 46597 CTCTAACCAACTGAGCTAATGGGCC 46621
>seq150
Length=973894
Score = 114 bits (126), Expect = 7e-21
Identities = 80/91 (88%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
||| ||||||| | |||||||||| |||||||||| |||||||||||||||||||
Sbjct 943763 TTACTAAAAAA--ATTTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGC 943820
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| ||||||||||||||||||||
Sbjct 943821 ACGACGCTCTAACCAACTGAGCTAATGGGCC 943851
>seq780
Length=172557
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 13520 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13461
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 13460 TGAGCTAATGGGCC 13447
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261414952843300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |