Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq276 183 5e-42
seq31 168 1e-37
seq6898 129 9e-26
seq195 113 7e-21
seq676 104 4e-18
>seq276
Length=376631
Score = 183 bits (202), Expect = 5e-42
Identities = 203/271 (75%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||||| | | || || |||||||||||||| |||||||| || ||
Sbjct 150319 CGCTAAACGTCATCGCAAAGTGTTGCGTGACAACATCCAAGGAATAACCAAGCCTGCCAT 150260
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| | ||||| ||||| ||||| || ||| |||| || ||| | || |||||||
Sbjct 150259 TCGTCGGTTAGCTCGCCGTGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAGAC 150200
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| ||||| | ||||| ||| ||| |||| || || || || |||||
Sbjct 150199 GCGTGGTGTGTTGAAAGTGTTCCTGGAGAACGTAATCCGCGACGCCGTCACATACACCGA 150140
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | || || |||||| ||||||| |||| || || |||||||| |||||
Sbjct 150139 GCACGCCAAGAGGAAAACAGTCACCGCCATGGACGTCGTTTACGCGTTGAAACGACAAGG 150080
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|||| |||| ||||| ||| | ||| ||
Sbjct 150079 ACGTACCCTTTACGGTTTCGGAGGCTAACCT 150049
>seq31
Length=1982931
Score = 168 bits (186), Expect = 1e-37
Identities = 198/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||| | | | || || ||||||||||| || |||||||| || ||
Sbjct 1629584 CGCTAAACGTCATCGTAAGGTTTTGCGTGACAACATCCAAGGGATAACCAAGCCTGCCAT 1629643
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| | ||||| || || ||||| || ||| |||| || ||| | || ||||| |
Sbjct 1629644 TCGTCGGTTAGCTCGCCGCGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAAAC 1629703
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| |||||| | ||||| ||| ||| || | || || || || |||||
Sbjct 1629704 ACGTGGTGTGTTGAAGGTGTTCCTGGAGAACGTAATTCGCGACGCCGTCACGTACACCGA 1629763
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| ||| | ||||| |||||| ||||||| ||||||| || | || || |||||
Sbjct 1629764 GCACGCCAAAAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTTAAGCGACAAGG 1629823
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||||| |||| ||||| ||| | |||
Sbjct 1629824 CCGTACCCTTTACGGTTTCGGAGGCTAA 1629851
Score = 168 bits (186), Expect = 1e-37
Identities = 198/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||| | | | || || ||||||||||| || |||||||| || ||
Sbjct 1636365 CGCTAAACGTCATCGTAAGGTTTTGCGTGACAACATCCAAGGGATAACCAAGCCTGCCAT 1636424
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| | ||||| || || ||||| || ||| |||| || ||| | || ||||| |
Sbjct 1636425 TCGTCGGTTAGCTCGCCGCGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAAAC 1636484
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| |||||| | ||||| ||| ||| || | || || || || |||||
Sbjct 1636485 ACGTGGTGTGTTGAAGGTGTTCCTGGAGAACGTAATTCGCGACGCCGTCACGTACACCGA 1636544
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| ||| | ||||| |||||| ||||||| ||||||| || | || || |||||
Sbjct 1636545 GCACGCCAAAAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTTAAGCGACAAGG 1636604
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||||| |||| ||||| ||| | |||
Sbjct 1636605 CCGTACCCTTTACGGTTTCGGAGGCTAA 1636632
Score = 163 bits (180), Expect = 4e-36
Identities = 197/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||| | | | || || ||||||||||| || |||||||| || ||
Sbjct 1520922 CGCTAAACGTCATCGTAAGGTTTTGCGTGACAACATCCAAGGGATAACCAAGCCTGCCAT 1520863
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| | ||||| || || ||||| || ||| |||| || ||| | || ||||| |
Sbjct 1520862 TCGTCGGTTAGCTCGCCGCGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAAAC 1520803
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| |||||| | ||||| ||| ||| |||| || || || || |||||
Sbjct 1520802 ACGTGGTGTGTTGAAGGTGTTCCTGGAGAACGTAATCCGCGACGCCGTCACGTACACCGA 1520743
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| ||||||| ||||||| || |||| || |||||
Sbjct 1520742 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTGAAGCGACAAGG 1520683
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || ||||| || |||||
Sbjct 1520682 TCGTACTTTGTACGGTTTCGGCGGTTAA 1520655
>seq6898
Length=1101
Score = 129 bits (142), Expect = 9e-26
Identities = 149/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 16502 GCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTT 16561
||||| ||||| ||||| || ||| |||| || ||| | || ||||||| |||| |||
Sbjct 1099 GCTCGCCGTGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAGACGCGTGGTGTG 1040
Query 16562 TTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAA 16621
||||| | ||||| ||| ||| |||| || || || || ||||||||||| ||
Sbjct 1039 TTGAAAGTGTTCCTGGAGAACGTAATCCGCGACGCCGTCACATACACCGAGCACGCCAAG 980
Query 16622 CGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT 16681
| || || |||||| ||||||| |||| || || |||||||| ||||| |||| ||
Sbjct 979 AGGAAAACAGTCACCGCCATGGACGTCGTTTACGCGTTGAAACGACAAGGACGTACCCTT 920
Query 16682 TATGGTTTTGGAAGTTAATCT 16702
|| ||||| ||| | ||| ||
Sbjct 919 TACGGTTTCGGAGGCTAACCT 899
>seq195
Length=1216335
Score = 113 bits (124), Expect = 7e-21
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || |||| || | | | || || |||||||| || ||||| ||||| || |||
Sbjct 764426 GCCAAACGGCATCCCAAAGTTTTCCGGGACAACATCCAGGGCATCACTAAGCCTGCAATC 764485
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| ||||| | || | ||||| || || | || |||||| |||||||||||
Sbjct 764486 TGTCGTTTGGCTTGCCGGAGAGGAGTGAAACGAATTTCCGGATTGACCTATGAAGAGACC 764545
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || |||||| | || || || | ||| |||| || | || ||||||||
Sbjct 764546 CGCGGAGTGTTGAAGGTTTTTCTGAAAAACGTGATCCGTGGCACCGTCACTTATACCGAA 764605
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| ||||| |||||| | || || || | ||||| |||| |
Sbjct 764606 CACGCCAAGAGGAAGACCGTCACGGATATGGATGTAGTGTACGCTCTCAAACGCCAAGAC 764665
Query 16673 CG 16674
||
Sbjct 764666 CG 764667
>seq676
Length=188709
Score = 104 bits (114), Expect = 4e-18
Identities = 122/165 (74%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594
||| |||| ||||||| |||| ||| ||||| | ||||| | | ||| |||| ||
Sbjct 10148 TTGATCTACGAAGAGACGCGTGGAGTTCTGAAGGTATTCCTGGAAAACGTGATCCGCGAC 10207
Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654
|| || || ||||||||||| || | ||||| |||||| ||||||| |||| ||
Sbjct 10208 GCAGTCACATACACCGAGCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTAC 10267
Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | ||||| |||||||||| | |||||||| ||| |||||
Sbjct 10268 GCTCTCAAACGACAAGGCCGTACCCTCTATGGTTTCGGAGGTTAA 10312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79053325205025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |