Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq276 183 5e-42 seq31 168 1e-37 seq6898 129 9e-26 seq195 113 7e-21 seq676 104 4e-18 >seq276 Length=376631 Score = 183 bits (202), Expect = 5e-42 Identities = 203/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||||| | | || || |||||||||||||| |||||||| || || Sbjct 150319 CGCTAAACGTCATCGCAAAGTGTTGCGTGACAACATCCAAGGAATAACCAAGCCTGCCAT 150260 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| | ||||| ||||| ||||| || ||| |||| || ||| | || ||||||| Sbjct 150259 TCGTCGGTTAGCTCGCCGTGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAGAC 150200 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||||| ||| ||| |||| || || || || ||||| Sbjct 150199 GCGTGGTGTGTTGAAAGTGTTCCTGGAGAACGTAATCCGCGACGCCGTCACATACACCGA 150140 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | || || |||||| ||||||| |||| || || |||||||| ||||| Sbjct 150139 GCACGCCAAGAGGAAAACAGTCACCGCCATGGACGTCGTTTACGCGTTGAAACGACAAGG 150080 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| |||| ||||| ||| | ||| || Sbjct 150079 ACGTACCCTTTACGGTTTCGGAGGCTAACCT 150049 >seq31 Length=1982931 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || || ||||||||||| || |||||||| || || Sbjct 1629584 CGCTAAACGTCATCGTAAGGTTTTGCGTGACAACATCCAAGGGATAACCAAGCCTGCCAT 1629643 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| | ||||| || || ||||| || ||| |||| || ||| | || ||||| | Sbjct 1629644 TCGTCGGTTAGCTCGCCGCGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAAAC 1629703 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | ||||| ||| ||| || | || || || || ||||| Sbjct 1629704 ACGTGGTGTGTTGAAGGTGTTCCTGGAGAACGTAATTCGCGACGCCGTCACGTACACCGA 1629763 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| | ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 1629764 GCACGCCAAAAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTTAAGCGACAAGG 1629823 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| |||| ||||| ||| | ||| Sbjct 1629824 CCGTACCCTTTACGGTTTCGGAGGCTAA 1629851 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || || ||||||||||| || |||||||| || || Sbjct 1636365 CGCTAAACGTCATCGTAAGGTTTTGCGTGACAACATCCAAGGGATAACCAAGCCTGCCAT 1636424 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| | ||||| || || ||||| || ||| |||| || ||| | || ||||| | Sbjct 1636425 TCGTCGGTTAGCTCGCCGCGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAAAC 1636484 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | ||||| ||| ||| || | || || || || ||||| Sbjct 1636485 ACGTGGTGTGTTGAAGGTGTTCCTGGAGAACGTAATTCGCGACGCCGTCACGTACACCGA 1636544 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| | ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 1636545 GCACGCCAAAAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTTAAGCGACAAGG 1636604 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| |||| ||||| ||| | ||| Sbjct 1636605 CCGTACCCTTTACGGTTTCGGAGGCTAA 1636632 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || || ||||||||||| || |||||||| || || Sbjct 1520922 CGCTAAACGTCATCGTAAGGTTTTGCGTGACAACATCCAAGGGATAACCAAGCCTGCCAT 1520863 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| | ||||| || || ||||| || ||| |||| || ||| | || ||||| | Sbjct 1520862 TCGTCGGTTAGCTCGCCGCGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAAAC 1520803 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | ||||| ||| ||| |||| || || || || ||||| Sbjct 1520802 ACGTGGTGTGTTGAAGGTGTTCCTGGAGAACGTAATCCGCGACGCCGTCACGTACACCGA 1520743 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| ||||||| || |||| || ||||| Sbjct 1520742 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTGAAGCGACAAGG 1520683 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 1520682 TCGTACTTTGTACGGTTTCGGCGGTTAA 1520655 >seq6898 Length=1101 Score = 129 bits (142), Expect = 9e-26 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 16502 GCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTT 16561 ||||| ||||| ||||| || ||| |||| || ||| | || ||||||| |||| ||| Sbjct 1099 GCTCGCCGTGGAGGAGTGAAACGTATCTCCGGTTTGATTTACGAAGAGACGCGTGGTGTG 1040 Query 16562 TTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAA 16621 ||||| | ||||| ||| ||| |||| || || || || ||||||||||| || Sbjct 1039 TTGAAAGTGTTCCTGGAGAACGTAATCCGCGACGCCGTCACATACACCGAGCACGCCAAG 980 Query 16622 CGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT 16681 | || || |||||| ||||||| |||| || || |||||||| ||||| |||| || Sbjct 979 AGGAAAACAGTCACCGCCATGGACGTCGTTTACGCGTTGAAACGACAAGGACGTACCCTT 920 Query 16682 TATGGTTTTGGAAGTTAATCT 16702 || ||||| ||| | ||| || Sbjct 919 TACGGTTTCGGAGGCTAACCT 899 >seq195 Length=1216335 Score = 113 bits (124), Expect = 7e-21 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || |||| || | | | || || |||||||| || ||||| ||||| || ||| Sbjct 764426 GCCAAACGGCATCCCAAAGTTTTCCGGGACAACATCCAGGGCATCACTAAGCCTGCAATC 764485 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| | || | ||||| || || | || |||||| ||||||||||| Sbjct 764486 TGTCGTTTGGCTTGCCGGAGAGGAGTGAAACGAATTTCCGGATTGACCTATGAAGAGACC 764545 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| | || || || | ||| |||| || | || |||||||| Sbjct 764546 CGCGGAGTGTTGAAGGTTTTTCTGAAAAACGTGATCCGTGGCACCGTCACTTATACCGAA 764605 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| |||||| | || || || | ||||| |||| | Sbjct 764606 CACGCCAAGAGGAAGACCGTCACGGATATGGATGTAGTGTACGCTCTCAAACGCCAAGAC 764665 Query 16673 CG 16674 || Sbjct 764666 CG 764667 >seq676 Length=188709 Score = 104 bits (114), Expect = 4e-18 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 ||| |||| ||||||| |||| ||| ||||| | ||||| | | ||| |||| || Sbjct 10148 TTGATCTACGAAGAGACGCGTGGAGTTCTGAAGGTATTCCTGGAAAACGTGATCCGCGAC 10207 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || || ||||||||||| || | ||||| |||||| ||||||| |||| || Sbjct 10208 GCAGTCACATACACCGAGCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTAC 10267 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | ||||| |||||||||| | |||||||| ||| ||||| Sbjct 10268 GCTCTCAAACGACAAGGCCGTACCCTCTATGGTTTCGGAGGTTAA 10312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79053325205025