Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq35 122 9e-23
seq1042 102 9e-17
>seq35
Length=1961283
Score = 122 bits (134), Expect = 9e-23
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 21518 TCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA 21577
||||| ||| |||||||| |||||||||||||| || || |||||||||| || |||
Sbjct 1197112 TCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTCAACCAAAATAATGCAGCA 1197053
Query 21578 AATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTAT 21637
|| ||| || || || || || ||||| ||||||||||||||||| | |||||| |
Sbjct 1197052 AAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCAACTAACCTTTCACCAAAA 1196993
Query 21638 GTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCA 21697
|| | || |||| |||||||| ||||| | |||||| | ||| | |||
Sbjct 1196992 GTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCCTTCTTTTTTACACACGGC 1196933
Query 21698 ATTGTATCAATAGCTTTTAA 21717
|| || |||||||| || ||
Sbjct 1196932 ATGGTTTCAATAGCATTAAA 1196913
Score = 111 bits (122), Expect = 2e-19
Identities = 138/189 (73%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||| |||||||||||||| ||| ||| || || || ||||||||||| |||
Sbjct 1196804 CTATACATTTCTGAATGTATATTTTCCATCATTATTTGGAACCCATAAAAACATCTAGCC 1196745
Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
|| | |||||| || | | |||| || | | | |||||||| || || |||||
Sbjct 1196744 TCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGATTTTCATTGACAATGCCATCT 1196685
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946
|| ||||||||||| |||| | |||||| | || || | ||| || |||||
Sbjct 1196684 GAAGCAGCAAAAAATGCTAATACGTGAGATATAAAGTGACGCTCATCATCAGTCAATTTC 1196625
Query 21947 TTCCAATCT 21955
||||||||
Sbjct 1196624 ATCCAATCT 1196616
>seq1042
Length=111944
Score = 102 bits (112), Expect = 9e-17
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||| ||||||||||| |||||| ||| || || || ||||||||||| |||
Sbjct 80554 CTATACATTTCTGAATGTATATTCTCTATCATTATTTGGAACCCATAAAAACATCTAGCC 80613
Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
|| | |||||| || | ||||||||| | | | |||||| | ||||| ||||
Sbjct 80614 TCAGTTACTTGAACTTCTTGAGAAAATCGTTTAACAAGATTTTCACTAACTATGCCATTT 80673
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946
|| || |||||||| | ||| | |||||| | || || | ||| || | | |
Sbjct 80674 GAAGCAGCTAAAAATGCTAGTATGTAGGATATAAAGTGACGCTCTTCATCAGTCATTCTC 80733
Query 21947 TTCCAATCT 21955
||||||||
Sbjct 80734 ATCCAATCT 80742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531741728417000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |