Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq35 122 9e-23 seq1042 102 9e-17 >seq35 Length=1961283 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 21518 TCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA 21577 ||||| ||| |||||||| |||||||||||||| || || |||||||||| || ||| Sbjct 1197112 TCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTCAACCAAAATAATGCAGCA 1197053 Query 21578 AATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTAT 21637 || ||| || || || || || ||||| ||||||||||||||||| | |||||| | Sbjct 1197052 AAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCAACTAACCTTTCACCAAAA 1196993 Query 21638 GTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCA 21697 || | || |||| |||||||| ||||| | |||||| | ||| | ||| Sbjct 1196992 GTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCCTTCTTTTTTACACACGGC 1196933 Query 21698 ATTGTATCAATAGCTTTTAA 21717 || || |||||||| || || Sbjct 1196932 ATGGTTTCAATAGCATTAAA 1196913 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||| |||||||||||||| ||| ||| || || || ||||||||||| ||| Sbjct 1196804 CTATACATTTCTGAATGTATATTTTCCATCATTATTTGGAACCCATAAAAACATCTAGCC 1196745 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 || | |||||| || | | |||| || | | | |||||||| || || ||||| Sbjct 1196744 TCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGATTTTCATTGACAATGCCATCT 1196685 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 || ||||||||||| |||| | |||||| | || || | ||| || ||||| Sbjct 1196684 GAAGCAGCAAAAAATGCTAATACGTGAGATATAAAGTGACGCTCATCATCAGTCAATTTC 1196625 Query 21947 TTCCAATCT 21955 |||||||| Sbjct 1196624 ATCCAATCT 1196616 >seq1042 Length=111944 Score = 102 bits (112), Expect = 9e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||| ||||||||||| |||||| ||| || || || ||||||||||| ||| Sbjct 80554 CTATACATTTCTGAATGTATATTCTCTATCATTATTTGGAACCCATAAAAACATCTAGCC 80613 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 || | |||||| || | ||||||||| | | | |||||| | ||||| |||| Sbjct 80614 TCAGTTACTTGAACTTCTTGAGAAAATCGTTTAACAAGATTTTCACTAACTATGCCATTT 80673 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 || || |||||||| | ||| | |||||| | || || | ||| || | | | Sbjct 80674 GAAGCAGCTAAAAATGCTAGTATGTAGGATATAAAGTGACGCTCTTCATCAGTCATTCTC 80733 Query 21947 TTCCAATCT 21955 |||||||| Sbjct 80734 ATCCAATCT 80742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531741728417000