Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq328 120 3e-22 seq276 105 6e-18 seq2302 89.7 5e-13 >seq328 Length=376668 Score = 120 bits (132), Expect = 3e-22 Identities = 188/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 71672 ACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCAC 71731 || ||||| || || |||||| |||| || |||| | || || || || || ||| Sbjct 43963 ACTCATGACGATCTGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCAC 44022 Query 71732 GGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAG 71791 || | |||||||||||||||||| |||||||| || || |||||| | ||||| || Sbjct 44023 GGTTTCCTACGCATGTACTGGGCAAAAAAGATACTAGAATGGACTGATACTCCAGATAGA 44082 Query 71792 GCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAAC 71851 || || | || | |||||||| || || | ||| || | || ||||| || || | Sbjct 44083 GCACTAGCAGATGCAATTTATCTTAATGACAAATATAGCATGGATGGTCGTGACCCGAGT 44142 Query 71852 GGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGT 71911 |||| ||| || || |||||| || || ||| |||| ||| | | |||| | Sbjct 44143 GGTTTTGTTGGATGTATGTGGTCAATATGTGGTATTCATGATCAGGGATGGAAAGAAAGA 44202 Query 71912 CAAGTGTTTGGTAAAATTCGCTATATGAA 71940 || | ||||| |||||| | |||||||| Sbjct 44203 GAAATTTTTGGAAAAATTAGGTATATGAA 44231 >seq276 Length=376631 Score = 105 bits (116), Expect = 6e-18 Identities = 173/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 26753 TTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCAT 26812 |||| |||| ||| |||||| | ||||| ||||| | ||||||||| | || || | Sbjct 240498 TTTTCAGTCT--CAAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTT 240555 Query 26813 CGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 26872 ||| |||||||| ||| | || || | || ||| || ||| ||||||||||| Sbjct 240556 GGAAGTAGAATCATCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGG 240615 Query 26873 GATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA 26932 || || || |||||||| || | |||| | ||| || ||| | ||||||| | | Sbjct 240616 AATCCCACCAGATCAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TA 240674 Query 26933 CGTCA-GCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAG 26991 ||| | ||||||||| ||||| |||||||| || | || | || || | ||| ||| Sbjct 240675 CGTTATCCGACTATAATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAG 240734 Query 26992 GAGGAA 26997 | |||| Sbjct 240735 GTGGAA 240740 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | ||||| ||| | ||||| | ||| ||||||| Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| | || || | || ||| || ||| |||||||||||||| || || ||||| Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241314 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCA-GCGACTATA 26946 ||| || | |||| | ||| || ||| | ||||||| | |||| | |||||||| Sbjct 241315 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCCGACTATA 241373 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | ||||| |||||||| || | || | || || | ||| |||| |||| Sbjct 241374 ATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGGAA 241424 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | ||||| ||| | ||||| | ||| ||||||| Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| | || || | || ||| || ||| |||||||||||||| || || ||||| Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241542 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| || | |||| | ||| || ||| | ||||||| | | | ||||||||| Sbjct 241543 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATAA 241602 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| |||||||| || | || | || || | ||| |||| |||| Sbjct 241603 TATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGGAA 241652 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | ||||| ||| | ||||| | ||| ||||||| Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| | || || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 240858 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCA-GCGACTATA 26946 ||| || | |||| | ||| || ||| | ||||||| | |||| | |||||||| Sbjct 240859 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCCGACTATA 240917 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | ||||| |||||||| || | || | || || | ||| |||| |||| Sbjct 240918 ATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGGAA 240968 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | ||||| ||| | ||||| | ||| ||||||| Sbjct 240967 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241026 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || | || || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 241027 AGATTCTATTGAAAATGTGAAAGCGAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 241086 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||| || | |||| | ||| || ||| | ||||||| | |||| | | ||||||| Sbjct 241087 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCTGACTATA 241145 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | ||||| |||||||| || | || | || || | ||| |||| |||| Sbjct 241146 ATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGGAA 241196 >seq2302 Length=121279 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||| || | |||||||| | || || | || | |||||| Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||| || | || ||| ||||| ||||||||||| || || || || ||| Sbjct 54270 GATTCCATTGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 54211 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | ||| || ||||| ||||| | | | | | |||||| ||| Sbjct 54210 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 54151 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||||||| | || |||| || |||| |||| || Sbjct 54150 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCGACTCCGAGGTGG 54104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478519250026000