Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq430 114 3e-20 seq35 84.2 6e-11 >seq430 Length=650307 Score = 114 bits (126), Expect = 3e-20 Identities = 231/340 (68%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 |||||| | ||||| ||||| |||||||||||||| || | |||||| || || | Sbjct 88325 AGGTGACTTGGGACCTGTTTATGGATTTCAATGGCGACATTATGGTGCTGAGTATGTAGA 88266 Query 111548 CATGCACGACTCAT-ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAA 111606 |||| ||| || | | | | || | ||||||| | || || ||||| || || Sbjct 88265 TGTGCAT-ACTGATTACTCTGGAAAAGGCATTGATCAACTTCAAAACGTCATCAATACAA 88207 Query 111607 TTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGG 111666 | || | ||||| | | || || |||||| |||||||| ||| || | Sbjct 88206 TCAAAACTAACCCTGACGATAGGCGAATGCTTATGATCGCATGGAATCCATGTGATGTAC 88147 Query 111667 AAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGC 111726 |||||||| | ||||| |||||| | || ||||||| ||| ||| || | Sbjct 88146 CTAAAATGGCCTTACCACCGTGTCATTGTCTGGTACAGTTTTTTGTCGCCGATGGCTATC 88087 Query 111727 TTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTG 111786 | || || |||||||| || ||||| || || || ||||| || || || |||||||||| Sbjct 88086 TGTCGTGTCAAATGTACCAACGATCAGCAGACATGGGTCTAGGAGTACCCTTTAATATTG 88027 Query 111787 CAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTAC 111826 | ||||| || ||||||| | | || || ||| |||| Sbjct 88026 CCAGTTATTCATTACTTACATATATGATAGCCCATGTTAC 87987 >seq35 Length=1961283 Score = 84.2 bits (92), Expect = 6e-11 Identities = 133/190 (70%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTTCATTCGCGGAA 22491 || || |||||||||||||| || |||||||| | | | | || | || | ||| Sbjct 1196943 AAAAAGAAGGCAGATTGGGCTCTTAAATGGATCAGTGATAGTAAAGCAACTTTTGGTGAA 1197002 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 | | |||||||||||| |||||||| || || || |||||| ||| |||| | Sbjct 1197003 AGGTTAGTTGCATTTGCTGCAGTTGAAGGTATATTTTTCTCTGGAAGTTTTGCTGCATTA 1197062 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 |||||| | || ||| | | | | ||||| ||| |||| ||| |||||| | ||| Sbjct 1197063 TTTTGGTTGAAGAAAAGAGGATTAATGCCAGGTTTAACTTTTAGCAATGAGCTGATTTCA 1197122 Query 22612 CGAGATGAGG 22621 ||||||||| Sbjct 1197123 AGAGATGAGG 1197132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302954071209350