Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq276 109 5e-19 seq2302 95.1 1e-14 seq231 84.2 2e-11 >seq276 Length=376631 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | ||||| ||||| | ||||||||| | || || | ||||| || | Sbjct 240508 CAAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTAGAATC 240567 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| | || || | || ||| || ||| ||||||||||| || || || || Sbjct 240568 ATCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGA 240627 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA-GCGATT 24165 ||||||| || | |||| | ||| |||||| | ||||||| | | |||| | ||| | Sbjct 240628 TCAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCCGACT 240686 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||| ||||| |||||||| ||| |||| ||||| Sbjct 240687 ATAATATTCAGAAAGAATCAACACTTCACTTAGT 240720 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || | Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| | || || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 240858 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA-GCGATTATA 24168 |||| || | |||| | ||| |||||| | ||||||| | | |||| | ||| |||| Sbjct 240859 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCCGACTATA 240917 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| |||||||| ||| |||| ||||| Sbjct 240918 ATATTCAGAAAGAATCAACACTTCACTTAGT 240948 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || | Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| | || || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241314 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA-GCGATTATA 24168 |||| || | |||| | ||| |||||| | ||||||| | | |||| | ||| |||| Sbjct 241315 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCCGACTATA 241373 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| |||||||| ||| |||| ||||| Sbjct 241374 ATATTCAGAAAGAATCAACACTTCACTTAGT 241404 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || | Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| | || || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241542 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| || | |||| | ||| |||||| | ||||||| | | | | ||| ||||| Sbjct 241543 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATAA 241602 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| |||||||| ||| |||| ||||| Sbjct 241603 TATTCAGAAAGAATCAACACTTCACTTAGT 241632 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || | Sbjct 240967 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241026 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | || || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 241027 AGATTCTATTGAAAATGTGAAAGCGAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 241086 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||| || | |||| | ||| |||||| | ||||||| | | |||| | | || |||| Sbjct 241087 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCTGACTATA 241145 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| |||||||| ||| |||| ||||| Sbjct 241146 ATATTCAGAAAGAATCAACACTTCACTTAGT 241176 >seq2302 Length=121279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | |||||||| | ||||| | || || || | Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||| || | || ||| ||||| ||||||||||| || || || || ||| Sbjct 54270 GATTCCATTGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 54211 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | | ||| |||||||| ||||| | | | | | ||| || ||| Sbjct 54210 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 54151 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||||||||||||| |||| || ||||| Sbjct 54150 ATTCAAAAAGAATCTACACTTCACTTGGTGTT 54119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| ||||| || ||||| ||| | || || | ||||| ||| | Sbjct 54562 CAACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTC 54503 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||| || | || ||| ||||| ||||||||||| || || || || Sbjct 54502 ATCAGATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCACCTGA 54443 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGCGATT 24165 ||||| | |||| | | ||| |||||||| ||||| ||| | || | || | Sbjct 54442 CCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACAC-TTTCTGACT 54384 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | ||||| || ||||||||||| |||| |||||||| Sbjct 54383 ACAACATCCAGAAAGAATCTACCCTTCACTTAGTGTT 54347 >seq231 Length=580210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || ||||| | || || || | || ||| | || |||||| | Sbjct 341022 CAACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTC 340963 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||| ||||| | |||||| || || || |||||||| || || ||||| Sbjct 340962 TTCAGACACTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGA 340903 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGA-AACGTCAGCGAT 24164 |||||| | |||| | || ||||||||| || |||||| ||| | | ||| ||| Sbjct 340902 TCAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACATTGTC--TGAT 340845 Query 24165 TATAACATTCAAAA 24178 |||||||| ||||| Sbjct 340844 TATAACATCCAAAA 340831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429810636708375