Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq276 109 5e-19
seq2302 95.1 1e-14
seq231 84.2 2e-11
>seq276
Length=376631
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| |||||| | ||||| ||||| | ||||||||| | || || | ||||| || |
Sbjct 240508 CAAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTAGAATC 240567
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
||| | || || | || ||| || ||| ||||||||||| || || || ||
Sbjct 240568 ATCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGA 240627
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA-GCGATT 24165
||||||| || | |||| | ||| |||||| | ||||||| | | |||| | ||| |
Sbjct 240628 TCAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCCGACT 240686
Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||| ||||| |||||||| ||| |||| |||||
Sbjct 240687 ATAATATTCAGAAAGAATCAACACTTCACTTAGT 240720
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || |
Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||| | || || | || ||| || ||| ||||||||||| || || || |||||
Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 240858
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA-GCGATTATA 24168
|||| || | |||| | ||| |||||| | ||||||| | | |||| | ||| ||||
Sbjct 240859 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCCGACTATA 240917
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199
| ||||| |||||||| ||| |||| |||||
Sbjct 240918 ATATTCAGAAAGAATCAACACTTCACTTAGT 240948
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || |
Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||| | || || | || ||| || ||| ||||||||||| || || || |||||
Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241314
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCA-GCGATTATA 24168
|||| || | |||| | ||| |||||| | ||||||| | | |||| | ||| ||||
Sbjct 241315 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCCGACTATA 241373
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199
| ||||| |||||||| ||| |||| |||||
Sbjct 241374 ATATTCAGAAAGAATCAACACTTCACTTAGT 241404
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || |
Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||| | || || | || ||| || ||| ||||||||||| || || || |||||
Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241542
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
|||| || | |||| | ||| |||||| | ||||||| | | | | ||| |||||
Sbjct 241543 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATAA 241602
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199
||||| |||||||| ||| |||| |||||
Sbjct 241603 TATTCAGAAAGAATCAACACTTCACTTAGT 241632
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || |
Sbjct 240967 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241026
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|| | || || | || ||| || ||| ||||||||||| || || || |||||
Sbjct 241027 AGATTCTATTGAAAATGTGAAAGCGAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 241086
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168
|||| || | |||| | ||| |||||| | ||||||| | | |||| | | || ||||
Sbjct 241087 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCG-TACGTTATCTGACTATA 241145
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199
| ||||| |||||||| ||| |||| |||||
Sbjct 241146 ATATTCAGAAAGAATCAACACTTCACTTAGT 241176
>seq2302
Length=121279
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | |||||||| || | |||||||| | ||||| | || || || |
Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| |||| || | || ||| ||||| ||||||||||| || || || || |||
Sbjct 54270 GATTCCATTGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 54211
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| | |||| | | ||| |||||||| ||||| | | | | | ||| || |||
Sbjct 54210 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 54151
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||||||||||||||||| |||| || |||||
Sbjct 54150 ATTCAAAAAGAATCTACACTTCACTTGGTGTT 54119
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | ||||| ||||| || ||||| ||| | || || | ||||| ||| |
Sbjct 54562 CAACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTC 54503
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
|| |||| || | || ||| ||||| ||||||||||| || || || ||
Sbjct 54502 ATCAGATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCACCTGA 54443
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGCGATT 24165
||||| | |||| | | ||| |||||||| ||||| ||| | || | || |
Sbjct 54442 CCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACAC-TTTCTGACT 54384
Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
| ||||| || ||||||||||| |||| ||||||||
Sbjct 54383 ACAACATCCAGAAAGAATCTACCCTTCACTTAGTGTT 54347
>seq231
Length=580210
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| |||||| | || || ||||| | || || || | || ||| | || |||||| |
Sbjct 341022 CAACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTC 340963
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
||||| ||||| | |||||| || || || |||||||| || || |||||
Sbjct 340962 TTCAGACACTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGA 340903
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGA-AACGTCAGCGAT 24164
|||||| | |||| | || ||||||||| || |||||| ||| | | ||| |||
Sbjct 340902 TCAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACATTGTC--TGAT 340845
Query 24165 TATAACATTCAAAA 24178
|||||||| |||||
Sbjct 340844 TATAACATCCAAAA 340831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429810636708375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |