Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq35 176 5e-39 seq1089 138 1e-27 seq160 138 1e-27 seq576 134 2e-26 seq614 132 5e-26 seq349 131 2e-25 seq239 131 2e-25 seq631 123 3e-23 seq1107 120 3e-22 seq1042 120 3e-22 seq428 118 1e-21 seq600 114 1e-20 seq544 114 1e-20 seq59 114 1e-20 seq156 95.1 1e-14 seq86 87.8 2e-12 >seq35 Length=1961283 Score = 176 bits (194), Expect = 5e-39 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| ||| |||| ||||||||| || ||||||||||| | | ||||| |||||| Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | |||||||| || ||||||||| ||||| |||||||||||||| || || |||||||| Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCA 1197011 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 || | | ||| ||||| |||| | || ||||||||||| | ||||||||| || Sbjct 1197010 ACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCC 1196951 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 || || || | ||| || | ||||| ||||| ||||||| Sbjct 1196950 TTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATA 1196911 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 93356 TCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCA 93415 ||| | || ||||| || ||||| | ||||||||| ||||| | ||| ||||| Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 93416 ATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCT 93475 |||||||| || || ||||||||||| || || | || ||||||||||| ||||| || Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712 Query 93476 ACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATA 93535 || |||||||||||||| || ||||| || || |||||||| || |||| || |||| Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652 Query 93536 AAATGTTTCTCATCATC 93552 || || ||||||||| Sbjct 1196651 AAGTGACGCTCATCATC 1196635 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 93589 ATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTC 93648 || ||||||||| ||| ||||||| || |||||| |||||||||||| |||| ||||| Sbjct 1196533 ATTGACTTCTTCTACATTCCAAAAAGAAGCTTCTTGTTTTTTGTACATGGCCCAAATGTC 1196474 Query 93649 TTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | |||| ||| || |||||||||||||| | || |||||||| ||||| || || Sbjct 1196473 GTCATATATAATAGGGAATATGACAAAACGTCTCGGATTATCTTTCAGTAAGGGTTC 1196417 >seq1089 Length=106908 Score = 138 bits (152), Expect = 1e-27 Identities = 85/90 (94%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 27569 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGA 27510 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||||| Sbjct 27509 GCGTGGGTTCGAACCCCACACCTGACAAAT 27480 >seq160 Length=461137 Score = 138 bits (152), Expect = 1e-27 Identities = 96/107 (90%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 450764 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAG 450823 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA--TTATTATTGGAATTTTT 126366 |||||||||||||||||||||||||||| ||| | || | |||||| Sbjct 450824 CGTGGGTTCGAACCCCACACCTGACAAATCTTAATTTTTGCATTTTT 450870 >seq576 Length=149404 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 125995 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGA 125936 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||||| Sbjct 125935 GCGTGGGTTCGAACCCCACACCTGACAA 125908 >seq614 Length=227230 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 12947 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAG 13006 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 13007 CGTGGGTTCGAACCCCACACCTGACAA 13033 >seq349 Length=897341 Score = 131 bits (144), Expect = 2e-25 Identities = 84/91 (92%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 493888 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 493947 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||||||||||||||||||| || || Sbjct 493948 TGGGTTCGAACCCCACACCTGACAATTTTTT 493978 >seq239 Length=568661 Score = 131 bits (144), Expect = 2e-25 Identities = 83/89 (93%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| |||| Sbjct 85447 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGG 85506 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||||| Sbjct 85507 AGCGTGGGTTCGAACCCCACACCTGACAA 85535 >seq631 Length=173759 Score = 123 bits (136), Expect = 3e-23 Identities = 80/87 (92%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||| ||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 156630 CAGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAG 156571 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||| ||||||||||||||||||||| Sbjct 156570 CGTGGATTCGAACCCCACACCTGACAA 156544 >seq1107 Length=107667 Score = 120 bits (132), Expect = 3e-22 Identities = 82/91 (90%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1467 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAG 1408 Query 126322 CGTGGGT----TCGAACCCCACACCTGACAA 126348 ||||||| |||||||||||||||||||| Sbjct 1407 CGTGGGTTCGATCGAACCCCACACCTGACAA 1377 >seq1042 Length=111944 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || |||||||| ||||| | ||||||||| ||||| | |||||| || |||||| Sbjct 80533 ATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATTATTTGG 80592 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || ||||||||||| || || | || |||||||||||||||| | || ||| Sbjct 80593 AACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTAACAAGA 80652 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||| | ||||| |||| || || || ||||| || | ||| | |||||| || Sbjct 80653 TTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATAAAGTGA 80712 Query 93542 TTCTCATCATC 93552 ||| ||||| Sbjct 80713 CGCTCTTCATC 80723 >seq428 Length=165776 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| || |||| |||||||||||||| ||| |||||| |||||| Sbjct 44348 CAGTCAGGTTGGCCGAGGGGCCTAAAGCGCCAGATTTAAGCTCTCGTTCCCAAACGGGAG 44289 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 44288 CGTGGGTTCGAACCCCACACCTGACAA 44262 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| || |||| |||||||||||||| ||| |||||| |||||| Sbjct 56401 CAGTCAGGTTGGCCGAGGGGCCTAAAGCGCCAGATTTAAGCTCTCGTTCCCAAACGGGAG 56342 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 56341 CGTGGGTTCGAACCCCACACCTGACAA 56315 Score = 116 bits (128), Expect = 4e-21 Identities = 76/83 (92%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||||| Sbjct 116111 AGTCAGGTTGGCCGAGGGGTCTAAAGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGC 116052 Query 126323 GTGGGTTCGAACCCCACACCTGA 126345 |||| |||||||||||||||||| Sbjct 116051 GTGGATTCGAACCCCACACCTGA 116029 Score = 116 bits (128), Expect = 4e-21 Identities = 76/83 (92%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||||| Sbjct 159583 AGTCAGGTTGGCCGAGGGGTCTAAAGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGC 159524 Query 126323 GTGGGTTCGAACCCCACACCTGA 126345 |||| |||||||||||||||||| Sbjct 159523 GTGGATTCGAACCCCACACCTGA 159501 >seq600 Length=74603 Score = 114 bits (126), Expect = 1e-20 Identities = 78/87 (90%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| || |||| |||||||||||||| ||| |||||| |||||| Sbjct 14626 CAGTCAGGTTGGCCGAGGGGCCTAAAGCGCCAGATTTAAGCTCTCGTTCCCAAACGGGAG 14685 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||| |||||||||||| Sbjct 14686 CGTGGGTTCGAACCTCACACCTGACAA 14712 >seq544 Length=176527 Score = 114 bits (126), Expect = 1e-20 Identities = 78/87 (90%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||| ||| ||||| |||| ||||||||||| |||||||||| |||||| Sbjct 60874 CAGTCAGGTTGGCGGAGCGGTCTTAGGCACCAGATTTAAGCTCTGGTTCCCAAACGGGAG 60815 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| |||||||||||||||||| Sbjct 60814 CGTGGGTTTGAACCCCACACCTGACAA 60788 >seq59 Length=1692180 Score = 114 bits (126), Expect = 1e-20 Identities = 78/87 (90%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||| ||||| ||||||| |||||||||||||| ||||||| || ||||| Sbjct 1046631 CAGTCAGGTTGACCGAGGGGTCTAAAGCGCCAGATTTAAGCTCTGGTTTCCAAATGGGAG 1046690 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 1046691 CGTGGGTTCGAACCCCACACCTGACAA 1046717 >seq156 Length=522420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||| ||||||||||| ||||||||| |||||||||| ||||||| Sbjct 486829 GTCAGGCTGGCCGAGCTGTCTAAGGCGCAAGATTTAAGCTCTGGTTCCCAAACGGGAGCA 486888 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| ||| |||| |||| |||| || || Sbjct 486889 TGGGTTTGAAACCCATACCTCACAATTTTTT 486919 >seq86 Length=815150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||| |||||||||||| |||||||||| ||||||||||| ||| |||| | || | | Sbjct 123461 AGTTAGGTTGGCCGAGCGGTCTAAGGCACCAGATTTAAGCTCTATCTCCCCTTGGGAAAC 123402 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| ||| |||||| ||||||||| ||| Sbjct 123401 ATGGGTTTGAATCCCACATCTGACAAATCATT 123370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556694263817000