Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1117 102 2e-16
seq1140 100 6e-16
seq648 100 6e-16
seq10794 98.7 2e-15
seq430 98.7 2e-15
seq146 98.7 2e-15
seq339 96.9 7e-15
seq412 95.1 2e-14
seq335 87.8 4e-12
seq67 87.8 4e-12
seq451 84.2 4e-11
seq388 84.2 4e-11
seq104 84.2 4e-11
>seq1117
Length=229805
Score = 102 bits (112), Expect = 2e-16
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 198111 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 198052
Query 142564 CCCACATCGGGCAGAA 142579
||||| | |||| |||
Sbjct 198051 CCCACGTTGGGCGGAA 198036
>seq1140
Length=133107
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||
Sbjct 39576 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 39517
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 39516 CCCCACGTTGGGC 39504
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||
Sbjct 95253 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 95312
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 95313 CCCCACGTTGGGC 95325
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 24375 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 24434
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 24435 CCCACGTTGGGC 24446
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 37926 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 37985
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 37986 CCCACGTTGGGC 37997
>seq648
Length=167369
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||
Sbjct 131756 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 131815
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 131816 CCCCACGTTGGGC 131828
>seq10794
Length=891
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 740 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 799
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 800 CCCACGTTGGGC 811
>seq430
Length=650307
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 255999 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 256058
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 256059 CCCACGTTGGGC 256070
>seq146
Length=840336
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 576014 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 576073
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 576074 CCCACGTTGGGC 576085
>seq339
Length=498468
Score = 96.9 bits (106), Expect = 7e-15
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 229506 ATAGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCAGGGTCGTGGGTTCG 229447
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 229446 AGCCCCAC 229439
>seq412
Length=740082
Score = 95.1 bits (104), Expect = 2e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558
||| |||| | |||||||||||||||||| | ||||||||||||| | |||||||||||
Sbjct 402859 AGAAAGCCACGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 402800
Query 142559 CGAGCCCCACATCGGGC 142575
|||||||||| | ||||
Sbjct 402799 CGAGCCCCACGTTGGGC 402783
>seq335
Length=407337
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110
||||| |||| ||||| ||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 83856 ATGTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGA 83797
Query 142111 CCCCCGCCAGAGA 142123
|||| |||| ||
Sbjct 83796 TCCCCACCAGGGA 83784
>seq67
Length=777735
Score = 87.8 bits (96), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
||||||||| ||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 618329 ATAGCCCGGCTAGCTCAGTTGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 618270
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 618269 AGCCCCAC 618262
>seq451
Length=359335
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112
||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| |
Sbjct 53558 GTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 53499
Query 142113 CCCGCCAGAGACGC 142126
||| |||| || ||
Sbjct 53498 CCCACCAGGGATGC 53485
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112
||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| |
Sbjct 54559 GTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 54500
Query 142113 CCCGCCAGAGACGC 142126
||| |||| || ||
Sbjct 54499 CCCACCAGGGATGC 54486
>seq388
Length=338517
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112
||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| |
Sbjct 236824 GTCCCTGTAGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 236883
Query 142113 CCCGCCAGAGACGC 142126
||| |||| || ||
Sbjct 236884 CCCACCAGGGATGC 236897
>seq104
Length=1089684
Score = 84.2 bits (92), Expect = 4e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565
|||| |||||||||||||||||| | ||||||||||| || ||||| ||||||||||||
Sbjct 83932 CCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATGTAAGGGTCGAGGGTTCGAGCCC 83873
Query 142566 CACATCGGG 142574
||| | |||
Sbjct 83872 CACGTTGGG 83864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027521727870925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |