Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1117 102 2e-16 seq1140 100 6e-16 seq648 100 6e-16 seq10794 98.7 2e-15 seq430 98.7 2e-15 seq146 98.7 2e-15 seq339 96.9 7e-15 seq412 95.1 2e-14 seq335 87.8 4e-12 seq67 87.8 4e-12 seq451 84.2 4e-11 seq388 84.2 4e-11 seq104 84.2 4e-11 >seq1117 Length=229805 Score = 102 bits (112), Expect = 2e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 198111 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 198052 Query 142564 CCCACATCGGGCAGAA 142579 ||||| | |||| ||| Sbjct 198051 CCCACGTTGGGCGGAA 198036 >seq1140 Length=133107 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 39576 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 39517 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 39516 CCCCACGTTGGGC 39504 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 95253 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 95312 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 95313 CCCCACGTTGGGC 95325 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 24375 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 24434 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 24435 CCCACGTTGGGC 24446 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 37926 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 37985 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 37986 CCCACGTTGGGC 37997 >seq648 Length=167369 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 131756 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 131815 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 131816 CCCCACGTTGGGC 131828 >seq10794 Length=891 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 740 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 799 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 800 CCCACGTTGGGC 811 >seq430 Length=650307 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 255999 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 256058 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 256059 CCCACGTTGGGC 256070 >seq146 Length=840336 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 576014 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 576073 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 576074 CCCACGTTGGGC 576085 >seq339 Length=498468 Score = 96.9 bits (106), Expect = 7e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||||| Sbjct 229506 ATAGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCAGGGTCGTGGGTTCG 229447 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 229446 AGCCCCAC 229439 >seq412 Length=740082 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||| | |||||||||||||||||| | ||||||||||||| | ||||||||||| Sbjct 402859 AGAAAGCCACGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTT 402800 Query 142559 CGAGCCCCACATCGGGC 142575 |||||||||| | |||| Sbjct 402799 CGAGCCCCACGTTGGGC 402783 >seq335 Length=407337 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 ||||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| Sbjct 83856 ATGTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGA 83797 Query 142111 CCCCCGCCAGAGA 142123 |||| |||| || Sbjct 83796 TCCCCACCAGGGA 83784 >seq67 Length=777735 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||| Sbjct 618329 ATAGCCCGGCTAGCTCAGTTGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 618270 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 618269 AGCCCCAC 618262 >seq451 Length=359335 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 53558 GTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 53499 Query 142113 CCCGCCAGAGACGC 142126 ||| |||| || || Sbjct 53498 CCCACCAGGGATGC 53485 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 54559 GTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 54500 Query 142113 CCCGCCAGAGACGC 142126 ||| |||| || || Sbjct 54499 CCCACCAGGGATGC 54486 >seq388 Length=338517 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 236824 GTCCCTGTAGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 236883 Query 142113 CCCGCCAGAGACGC 142126 ||| |||| || || Sbjct 236884 CCCACCAGGGATGC 236897 >seq104 Length=1089684 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565 |||| |||||||||||||||||| | ||||||||||| || ||||| |||||||||||| Sbjct 83932 CCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATGTAAGGGTCGAGGGTTCGAGCCC 83873 Query 142566 CACATCGGG 142574 ||| | ||| Sbjct 83872 CACGTTGGG 83864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027521727870925