Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_008689.1
Length=44857
Score E
Sequences producing significant alignments: (Bits) Value
seq3883 201 3e-47
seq3262 100 8e-17
>seq3883
Length=4185
Score = 201 bits (222), Expect = 3e-47
Identities = 403/592 (68%), Gaps = 14/592 (2%)
Strand=Plus/Plus
Query 24500 ACCGAAGACGAAAATATTATACTCTTGTTTCGCTTGCATTCAAGAATCTAAAGAATCCGA 24559
||| || || ||| ||||| ||||| || || || ||||| |||||||| || ||
Sbjct 136 ACCCAAAACTAAAGAGTTATATAGTTGTTATGCATGTATCCAAGATTCTAAAGAGTCTGA 195
Query 24560 CACTCAAACGAATCTCAATACAGGTAGCAAATTCATTAAAACTATTATTATCAGAGATAC 24619
|| ||||| | | | ||||||||||| || || || |||||| ||||||| ||||| |
Sbjct 196 TACGCAAACAAGTATTAATACAGGTAGTAAGTTTATAAAAACTTTTATTATAAGAGACCC 255
Query 24620 ACGAGGTGATTATAAACCAACAAATAAGCATTACGTCTTGCATGAAGGGCAAAGATTTAA 24679
|||||||||||||||| | ||||||||||| || |||| ||||| | | | |
Sbjct 256 TAGAGGTGATTATAAACCTAGTAATAAGCATTATGTTATGCACGAAGGTATTCGCTATGA 315
Query 24680 CATCAAATATGTAAAGCCAGATTATCAAGATAAATCTTATTTGCGTATCTATGGCGAGGT 24739
| || ||| | ||||||||||||| || ||||| | || || ||||||| |||||
Sbjct 316 TGTGAAGTATTTTAAGCCAGATTATCGTGACAAATCATTCTTACGAGTCTATGGTGAGGT 375
Query 24740 GGTCATTTAATGGGGGCAAGAATTGAAAGTAATAACATCGAACAAGGTTTGAAAAATGCA 24799
| | || || |||| || | |||||||| |||| || ||| || || ||||| |
Sbjct 376 GTTAATATAGTGGGTGCTAAAATTGAAAAAAATACAATAGAATCTGGATT-AAAAAGAGA 434
Query 24800 GTTTTAAAAATGAATT--TAAATAG--TAATGTAATTGTCAAAGCTGGGGCTATGTCATT 24855
||| | || || | || | ||| | || | | || || ||| || ||
Sbjct 435 GTT---ACTATCTTTTCCGAGATTGCAGAATAAAGTTTTAAGAGAAGGTGCTTCTTCTTT 491
Query 24856 AGTCCCGCTTTTAAAAAGTAATACACCT---TTTGCGAATACTAAAAAGCATGCTCGCGA 24912
| |||| | ||| | ||||||||| || || | ||| ||||| ||
Sbjct 492 AATCCCATTATTAGTTAAAAATACACCTAAAAGTGAGAGAAGCAAA---CATGCAAAAGA 548
Query 24913 TCACATAGCTGTTTCTAATGTGAAAACAGACAGACACACAAGTGAGAAAATTGTTACAAT 24972
|| | || |||||||||| ||||| || ||| | | ||| ||| ||| ||| |
Sbjct 549 CCATGTTGCAATTTCTAATGTCAAAACTGATAGAGATTCTTATGAAAAATATGTAACAGT 608
Query 24973 TGGTTACGCTAAAGGCGTCTCACATCGTATTCATGCAACAGAATTTGGAACAATGTACCA 25032
||||| | ||||| ||| | ||||||| | ||||||||||| ||||| ||
Sbjct 609 AGGTTATGAAAAAGGATATAGTCATAGAATTCATGTCATTGAATTTGGAACCATGTATCA 668
Query 25033 AAAACCACAATTGTTTATAACAAAAACAGAAAAGCAAGGGAAAAACAAAGTT 25084
|||||||||||||||| | || |||| ||||| || | | ||||| ||||
Sbjct 669 AAAACCACAATTGTTTGTCACTAAAAGTGAAAAAGAACGTAGAAACATAGTT 720
>seq3262
Length=4198
Score = 100 bits (110), Expect = 8e-17
Identities = 127/169 (75%), Gaps = 7/169 (4%)
Strand=Plus/Minus
Query 40054 AATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCT-TGGTCTTCGA 40112
||| |||||||||| | ||| ||||| | ||||| | | ||||||| | ||||||
Sbjct 906 AATTCTTCGTATTGT-TAGCT-CGCTTGCTTAGGGGACAGCTTCAGCCTGTAGTCTTCAG 849
Query 40113 CTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACT 40172
|| | ||| ||||||| | ||||||| | ||||| ||||| | ||||| | |||||
Sbjct 848 CTCGTCCTGTTCCCTCAAGCGTCTCGCT-TAAATACGTGGTATTCATATGTAGTATTACT 790
Query 40173 TTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAATTTAATAAATAC 40221
|| ||| |||| ||||||||| ||||||||||| ||| |||||||
Sbjct 789 TTTAAACACTT---AAAAATAAGGTTCTTTCGTATAAATTAGTAAATAC 744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143380052806150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |