Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_008689.1 Length=44857 Score E Sequences producing significant alignments: (Bits) Value seq3883 201 3e-47 seq3262 100 8e-17 >seq3883 Length=4185 Score = 201 bits (222), Expect = 3e-47 Identities = 403/592 (68%), Gaps = 14/592 (2%) Strand=Plus/Plus Query 24500 ACCGAAGACGAAAATATTATACTCTTGTTTCGCTTGCATTCAAGAATCTAAAGAATCCGA 24559 ||| || || ||| ||||| ||||| || || || ||||| |||||||| || || Sbjct 136 ACCCAAAACTAAAGAGTTATATAGTTGTTATGCATGTATCCAAGATTCTAAAGAGTCTGA 195 Query 24560 CACTCAAACGAATCTCAATACAGGTAGCAAATTCATTAAAACTATTATTATCAGAGATAC 24619 || ||||| | | | ||||||||||| || || || |||||| ||||||| ||||| | Sbjct 196 TACGCAAACAAGTATTAATACAGGTAGTAAGTTTATAAAAACTTTTATTATAAGAGACCC 255 Query 24620 ACGAGGTGATTATAAACCAACAAATAAGCATTACGTCTTGCATGAAGGGCAAAGATTTAA 24679 |||||||||||||||| | ||||||||||| || |||| ||||| | | | | Sbjct 256 TAGAGGTGATTATAAACCTAGTAATAAGCATTATGTTATGCACGAAGGTATTCGCTATGA 315 Query 24680 CATCAAATATGTAAAGCCAGATTATCAAGATAAATCTTATTTGCGTATCTATGGCGAGGT 24739 | || ||| | ||||||||||||| || ||||| | || || ||||||| ||||| Sbjct 316 TGTGAAGTATTTTAAGCCAGATTATCGTGACAAATCATTCTTACGAGTCTATGGTGAGGT 375 Query 24740 GGTCATTTAATGGGGGCAAGAATTGAAAGTAATAACATCGAACAAGGTTTGAAAAATGCA 24799 | | || || |||| || | |||||||| |||| || ||| || || ||||| | Sbjct 376 GTTAATATAGTGGGTGCTAAAATTGAAAAAAATACAATAGAATCTGGATT-AAAAAGAGA 434 Query 24800 GTTTTAAAAATGAATT--TAAATAG--TAATGTAATTGTCAAAGCTGGGGCTATGTCATT 24855 ||| | || || | || | ||| | || | | || || ||| || || Sbjct 435 GTT---ACTATCTTTTCCGAGATTGCAGAATAAAGTTTTAAGAGAAGGTGCTTCTTCTTT 491 Query 24856 AGTCCCGCTTTTAAAAAGTAATACACCT---TTTGCGAATACTAAAAAGCATGCTCGCGA 24912 | |||| | ||| | ||||||||| || || | ||| ||||| || Sbjct 492 AATCCCATTATTAGTTAAAAATACACCTAAAAGTGAGAGAAGCAAA---CATGCAAAAGA 548 Query 24913 TCACATAGCTGTTTCTAATGTGAAAACAGACAGACACACAAGTGAGAAAATTGTTACAAT 24972 || | || |||||||||| ||||| || ||| | | ||| ||| ||| ||| | Sbjct 549 CCATGTTGCAATTTCTAATGTCAAAACTGATAGAGATTCTTATGAAAAATATGTAACAGT 608 Query 24973 TGGTTACGCTAAAGGCGTCTCACATCGTATTCATGCAACAGAATTTGGAACAATGTACCA 25032 ||||| | ||||| ||| | ||||||| | ||||||||||| ||||| || Sbjct 609 AGGTTATGAAAAAGGATATAGTCATAGAATTCATGTCATTGAATTTGGAACCATGTATCA 668 Query 25033 AAAACCACAATTGTTTATAACAAAAACAGAAAAGCAAGGGAAAAACAAAGTT 25084 |||||||||||||||| | || |||| ||||| || | | ||||| |||| Sbjct 669 AAAACCACAATTGTTTGTCACTAAAAGTGAAAAAGAACGTAGAAACATAGTT 720 >seq3262 Length=4198 Score = 100 bits (110), Expect = 8e-17 Identities = 127/169 (75%), Gaps = 7/169 (4%) Strand=Plus/Minus Query 40054 AATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCT-TGGTCTTCGA 40112 ||| |||||||||| | ||| ||||| | ||||| | | ||||||| | |||||| Sbjct 906 AATTCTTCGTATTGT-TAGCT-CGCTTGCTTAGGGGACAGCTTCAGCCTGTAGTCTTCAG 849 Query 40113 CTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACT 40172 || | ||| ||||||| | ||||||| | ||||| ||||| | ||||| | ||||| Sbjct 848 CTCGTCCTGTTCCCTCAAGCGTCTCGCT-TAAATACGTGGTATTCATATGTAGTATTACT 790 Query 40173 TTGAAATACTTTaaaaaaaTAAGACACTTTCGTATAATTTAATAAATAC 40221 || ||| |||| ||||||||| ||||||||||| ||| ||||||| Sbjct 789 TTTAAACACTT---AAAAATAAGGTTCTTTCGTATAAATTAGTAAATAC 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143380052806150