Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_008722.1 Length=43420 Score E Sequences producing significant alignments: (Bits) Value seq2740 161 3e-35 >seq2740 Length=4841 Score = 161 bits (178), Expect = 3e-35 Identities = 429/651 (66%), Gaps = 22/651 (3%) Strand=Plus/Minus Query 17539 GCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTA 17598 ||||||| || |||||||||| ||| ||| || || | ||||| || ||| Sbjct 4309 GCAGAGTATTTCGAGTCACAAAGTGGTCAAGCTATTCCAAACGGTATAATCGTAACTTTA 4250 Query 17599 GACGGCGATAAGATAAGAAAAGCGCAACCTAATGACACACCAATTGGCGTTATATCTGGA 17658 || || | | | |||||||| ||| |||||||| |||||||||||||||||||| Sbjct 4249 GATGGGCGTTATACCAGAAAAGCACAAGTTAATGACAAGCCAATTGGCGTTATATCTGGT 4190 Query 17659 ACTGCTGCATTGGTAGCAAATGAAAAAACATTCCACCATAAAGATAGATTTTTAAAAAAT 17718 || |||| | || | ||| | |||||| |||||||| |||||| ||||| || Sbjct 4189 ACAGCTGGGGTTGTGTTAGGTGACCAGTTATTCCATCATAAAGACAGATTTATAAAAGAT 4130 Query 17719 GAGTATGGAGTAACGATTACA-AACAGAAAACAAGTTGAATTTGTAGACGATGAAGGAAA 17777 || | ||||| | | || |||| | || |||||||| ||||| | ||| ||| | Sbjct 4129 GAATTCGGAGTTGTGGTAACTGAACA-ACAAGAAGTTGAAATTGTAAAAGATACAGGTGA 4071 Query 17778 TGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAATCGA 17837 || | |||| || || || ||| ||| || |||||||| |||| || || Sbjct 4070 AGTCGTTAAAGAATTACGAGATATTCCATTAGTTAATCCTGAATACGACGAAAATGAAGA 4011 Query 17838 TTATCAATCACGTTCAGAACGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAATCTA 17897 |||| | ||||| || |||| ||||||||||| || || || |||||||| | Sbjct 4010 TTATTTGGCGCGTTCTGATAGACCAGAATGGAATGTCGTAGGTTTGACTGGTCAAATATT 3951 Query 17898 CACGAACATTGAAAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGTAGG 17957 ||| | ||||| || |||| | || ||||| || | || ||| | || Sbjct 3950 CACAAGAATTGATAACACAGTTAAAGTCAATGATTATATAAAAGCTAATAATGGTATTGG 3891 Query 17958 ATATAAAGATAATGTGAATGGTAAAGGTCGTGTCATGAAAAT---AACTTCTGAATACAC 18014 | |||||||||||||||||| | | || ||| |||| ||| || | | || Sbjct 3890 AACAAAAGATAATGTGAATGGTTACTACAGAGTTATGGAAATCACAACGCCTTACGATAC 3831 Query 18015 TGAAGAACGTGGATGTGCAATAGCATTAGTATT----------GTGGGGTGCTAA---AT 18061 |||| || |||| || ||||| | |||| | || || || | Sbjct 3830 TGAAAAA---GGATATGGCGTAGCAGTCATATTAGTTAAGTAGGAGGAATGACAATGGAA 3774 Query 18062 AATGGAATTAGAAAAAGTAGGTAAACTTGATTTAAACGAAGAACCATATTTACAACCGAT 18121 |||||||| | | ||| |||| |||||||||| | || || |||||| ||| || Sbjct 3773 AATGGAATCA-ATAAAAAAGGTTTCTTTGATTTAAAAGTTGAGCCTTATTTAAGACCAAT 3715 Query 18122 ATCTAATAGAGGTATCGGTTTTTATAATCTCGATAAAAACACTGCTAAATT 18172 ||| || ||| || |||||||||||| | || |||| || || | ||| Sbjct 3714 CTCTGATTTAGGGATTGGTTTTTATAATTTAGACGAAAATACAGCAACATT 3664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138782959254700