Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_008723.1 Length=44041 Score E Sequences producing significant alignments: (Bits) Value seq2740 111 4e-20 >seq2740 Length=4841 Score = 111 bits (122), Expect = 4e-20 Identities = 423/652 (65%), Gaps = 24/652 (4%) Strand=Plus/Minus Query 18186 GCAGAGTTATTTGAGTCACAAAATGGATTAGCAGTTGATTTAGGAACTATCGTTACTTTA 18245 ||||||| || |||||||||| ||| ||| || || | ||||| |||||| Sbjct 4309 GCAGAGTATTTCGAGTCACAAAGTGGTCAAGCTATTCCAAACGGTATAATCGTAACTTTA 4250 Query 18246 GACGGAGATAAAATAAGAAAAGCGCAACCTAGTGACGAGCCTATTGGTGTCATTTCTGGC 18305 || || | | | |||||||| ||| || |||| |||| ||||| || || ||||| Sbjct 4249 GATGGGCGTTATACCAGAAAAGCACAAGTTAATGACAAGCCAATTGGCGTTATATCTGGT 4190 Query 18306 ACTGCTGCATTAGTCGCTAAC-GAAAAAACATTCCACCATAAAGATAGATTCTTAAAGAA 18364 || |||| | || | || || | |||||| |||||||| ||||| |||| | Sbjct 4189 ACAGCTGGGGTTGT-GTTAGGTGACCAGTTATTCCATCATAAAGACAGATTTATAAAAGA 4131 Query 18365 TGAATACGGTGTAACGATTACAAATAGAAAACAAGTTGAGTTTGTAGACGATGAGGGCAA 18424 ||||| ||| || | | || | | || ||||||| ||||| | ||| || | Sbjct 4130 TGAATTCGGAGTTGTGGTAACTGAACAACAAGAAGTTGAAATTGTAAAAGATACAGGTGA 4071 Query 18425 TGTTTCATTC--GAATGGCGTGATGTACCAGTAGAAAACCCTGATTATGACGATAGCATT 18482 || | || |||| || ||| | ||| ||| || ||||| || ||||| | || Sbjct 4070 AGT--CGTTAAAGAATTACGAGATATTCCATTAGTTAATCCTGAATACGACGAAA--ATG 4015 Query 18483 AG--TTACGAATCTCGTTCAGAAAGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAA 18540 | ||| | ||||| || ||||| ||||||||||| || || || ||||||| Sbjct 4014 AAGATTATTTGGCGCGTTCTGATAGACCAGAATGGAATGTCGTAGGTTTGACTGGTCAAA 3955 Query 18541 TCTACACAAACATTGAAAAAGATGTTATACCAGGTGACTATATCAATGGTAGAGCAGGTG 18600 | | ||||| ||||| || |||| | ||| ||||| || | || ||| Sbjct 3954 TATTCACAAGAATTGATAACACAGTTAAAGTCAATGATTATATAAAAGCTAATAATGGTA 3895 Query 18601 TAGGTTACAAAGATAATATAAATGGTAAAGGTAGAGTCATGAAGAT---AACTTCTGAAT 18657 | || ||||||||| | |||||| | ||||| ||| | || ||| || | Sbjct 3894 TTGGAACAAAAGATAATGTGAATGGTTACTACAGAGTTATGGAAATCACAACGCCTTACG 3835 Query 18658 ACACTGAAGAACG---TGGCTGTGCAATAGCATTAGT--ATT--GTGGGGTGCTAA---A 18707 | |||||| || | |||| ||| | |||||| | | | || || || | Sbjct 3834 ATACTGAAAAAGGATATGGCGTAGCAGTCATATTAGTTAAGTAGGAGGAATGACAATGGA 3775 Query 18708 TAATGGAGTTAGAAAAAGTAGGTAAACTTGATTTAAATGAAGAACCATATTTACAACCGA 18767 |||||| | | | ||| |||| |||||||||| | || || |||||| ||| | Sbjct 3774 AAATGGAATCA-ATAAAAAAGGTTTCTTTGATTTAAAAGTTGAGCCTTATTTAAGACCAA 3716 Query 18768 TATCTAATAGAGGTATCGGTTTTTATAATCTCGATAAAAACACTGCTAAATT 18819 | ||| || ||| || |||||||||||| | || |||| || || | ||| Sbjct 3715 TCTCTGATTTAGGGATTGGTTTTTATAATTTAGACGAAAATACAGCAACATT 3664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140769594672550