Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_008920.1 Length=3403 Score E Sequences producing significant alignments: (Bits) Value seq1123 78.8 2e-11 seq314 78.8 2e-11 seq165 78.8 2e-11 >seq1123 Length=125858 Score = 78.8 bits (86), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 1767 AAAATGGAAATAGCATCCTTTGATTTTTACATTCGGGAACACTTCTCTACATGCAATGAT 1826 ||||||||||| ||||||||| ||||||||| || || |||||| || ||||| | || Sbjct 73627 AAAATGGAAATGGCATCCTTTTTGTTTTACATTAGGAAATACTTCTTTAAATGCATTAAT 73568 Query 1827 AAATGCCATTTCGAAATC 1844 |||||||||| ||||| Sbjct 73567 TGATGCCATTTCAAAATC 73550 >seq314 Length=233009 Score = 78.8 bits (86), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 1767 AAAATGGAAATAGCATCCTTTGATTTTTACATTCGGGAACACTTCTCTACATGCAATGAT 1826 ||||||||||| ||||||||| ||||||||| || || |||||| || ||||| | || Sbjct 59136 AAAATGGAAATGGCATCCTTTTTGTTTTACATTAGGAAATACTTCTTTAAATGCATTAAT 59077 Query 1827 AAATGCCATTTCGAAATC 1844 |||||||||| ||||| Sbjct 59076 TGATGCCATTTCAAAATC 59059 >seq165 Length=388029 Score = 78.8 bits (86), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 1767 AAAATGGAAATAGCATCCTTTGATTTTTACATTCGGGAACACTTCTCTACATGCAATGAT 1826 ||||||||||| ||||||||| ||||||||| || || |||||| || ||||| | || Sbjct 63993 AAAATGGAAATGGCATCCTTTTTGTTTTACATTAGGAAATACTTCTTTAAATGCATTAAT 63934 Query 1827 AAATGCCATTTCGAAATC 1844 |||||||||| ||||| Sbjct 63933 TGATGCCATTTCAAAATC 63916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 10774779721000