Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 132 4e-26
seq276 98.7 8e-16
seq86 98.7 8e-16
>seq2302
Length=121279
Score = 132 bits (146), Expect = 4e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | ||| ||||| || | ||||||||||| || |||||||| ||
Sbjct 54329 ATACCACCACGGAGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 54388
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||||||||||| || || || |||| | ||| |||||||| ||
Sbjct 54389 GAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGT 54448
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||||||||| ||||| ||||| | ||||| || || | || ||
Sbjct 54449 GGAATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCA 54508
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| || | ||||| || |||| |||||| ||||| |||||||||
Sbjct 54509 ACTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATG 54559
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || |||| ||| || || || | ||||||||||||||||||||||| |||
Sbjct 54101 ATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCG 54160
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| ||||||||||| || || || |||| | ||| |||||||| ||
Sbjct 54161 GAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGT 54220
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||||||||| ||||| ||||| | ||||| || || | |||||
Sbjct 54221 GGGATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCC 54280
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || || || |||||||| || |||||
Sbjct 54281 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || |||| ||| || || || | ||||||||||||||||||||||| |||
Sbjct 52961 ATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCG 53020
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| ||||||||||| || ||||| |||| | ||| || ||||| ||
Sbjct 53021 GAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGT 53080
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| || | | ||||| || || | |||||
Sbjct 53081 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCC 53140
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || || || || || || || |||||
Sbjct 53141 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53190
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || |||| ||| || || || | ||||||||||||||||||||||| |||
Sbjct 53873 ATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCG 53932
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| ||||||||||| || ||||| |||| | ||| ||||| || ||
Sbjct 53933 GAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGT 53992
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| || | | ||||| | || | |||||
Sbjct 53993 GGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCC 54052
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || || || || || || ||||||||
Sbjct 54053 ACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|||||||| || | ||| || || || | |||||||||||||||||||| || |||
Sbjct 52508 CCGCCACGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAA 52567
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| ||||| |||||||||||| || || || |||| ||||| || ||||| || ||
Sbjct 52568 AGGGTACGTCCATCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGG 52627
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|| ||||| ||||| ||||| || | | ||||| | || | ||||| ||
Sbjct 52628 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGAATCAGAAGATTCTACT 52687
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||| || | || || || || || || ||||| || || |||||
Sbjct 52688 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 52734
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || |||| ||| || || || | ||||||||||||||||||||||| |||
Sbjct 53189 ATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCG 53248
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| ||||||||||| || || || |||| | ||| || ||||| ||
Sbjct 53249 GAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGT 53308
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| || | | ||||| || || | |||||
Sbjct 53309 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCC 53368
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || || || || || || || |||||
Sbjct 53369 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || |||| ||| || || || | ||||||||||||||||||||||| |||
Sbjct 53417 ATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCG 53476
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| ||||||||||| || || || |||| | ||| |||||||| ||
Sbjct 53477 GAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGT 53536
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| || | | ||||| | || | |||||
Sbjct 53537 GGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCC 53596
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || || || || || || || |||||
Sbjct 53597 ACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || |||| ||| || || || | ||||||||||||||||||||||| |||
Sbjct 53645 ATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCG 53704
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| ||||||||||| || || || |||| | ||| || ||||| ||
Sbjct 53705 GAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGT 53764
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| || | | ||||| | || | |||||
Sbjct 53765 GGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCC 53824
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || || || || || || || |||||
Sbjct 53825 ACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || |||| ||| || || || | |||||||||||||||||||| || ||
Sbjct 52733 ATACCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCA 52792
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||||||||||| || || || |||| | ||| |||||||| ||
Sbjct 52793 GAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGT 52852
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| || | | ||||| || || | |||||
Sbjct 52853 GGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCC 52912
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || || || || || || || |||||
Sbjct 52913 ACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 52962
>seq276
Length=376631
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
||||| || | || |||||||| ||||| || || ||| | |||||| ||||||
Sbjct 241632 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCC 241573
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
| ||| || || || | || | |||||||| || || || || ||||||||||| |
Sbjct 241572 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241513
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
|| || ||| | | ||||| | ||| | ||||| || |||| || | ||||||
Sbjct 241512 ATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTG 241453
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || || ||||| ||||| || |||||
Sbjct 241452 CCAGTAAGGGTTTTCACAAAGATTTGCAT 241424
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
||||| || | || |||||||| ||||| || || ||| | ||||| ||||||
Sbjct 240720 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240661
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
| ||| || || || | || | |||||||| || || || || ||||||||||| |
Sbjct 240660 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240601
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
|| || ||| | | ||||| | ||| | ||||| || |||| || | |||||
Sbjct 240600 ATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTT 240541
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || |||||||| ||||| || |||||
Sbjct 240540 CCAGTAAGAGTTTTCACAAAGATTTGCAT 240512
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
||||| || | || |||||||| ||||| || || ||| | ||||| ||||||
Sbjct 240948 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240889
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
| ||| || || || | || | |||||||| || || || || ||||||||||| |
Sbjct 240888 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240829
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
|| || ||| | | ||||| | ||| | ||||| || |||| || | ||||||
Sbjct 240828 ATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTG 240769
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || || ||||| ||||| || |||||
Sbjct 240768 CCAGTAAGGGTTTTCACAAAGATTTGCAT 240740
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
||||| || | || |||||||| ||||| || || ||| | ||||| ||||||
Sbjct 241404 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 241345
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
| ||| || || || | || | |||||||| || || || || ||||||||||| |
Sbjct 241344 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241285
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
|| || ||| | | ||||| | ||| | ||||| || |||| || | ||||||
Sbjct 241284 ATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTG 241225
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || || ||||| ||||| || |||||
Sbjct 241224 CCAGTAAGGGTTTTCACAAAGATTTGCAT 241196
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
||||| || | || |||||||| ||||| || || || | ||||| ||||||
Sbjct 241176 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCC 241117
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
| ||| || || || | || | |||||||| || || || || ||||||||||| |
Sbjct 241116 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 241057
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
|| || ||| | | ||||| | || | ||||| || |||| || | ||||||
Sbjct 241056 ATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTG 240997
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || || ||||| ||||| || |||||
Sbjct 240996 CCAGTAAGGGTTTTCACAAAGATTTGCAT 240968
>seq86
Length=815150
Score = 98.7 bits (108), Expect = 8e-16
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224
||||| | ||| || || | |||||||||||||||||||||||||| || ||||||
Sbjct 596450 AGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGACAAAGTACGG 596509
Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281
||||||||||||||| || || | || | ||| || || ||||||||||| |||
Sbjct 596510 CCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAGGAATACCT 596566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420011894717100
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